Table 1 |
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Putative formin-related genes of Arabidopsis thaliana |
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| Protein |
Number |
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| Primary |
sequence |
ORF |
ORF |
of |
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| Gene |
accession |
accession |
location* |
size† |
Type |
Chr‡ |
introns |
Notes |
| AtFORMIN1 |
gb|AC002062 |
gb|AAB61101 |
47 640...48 637; |
760 |
Genomic |
I |
I |
AtORF2 in [6] |
| (emb|T43335) |
48 716...50 000 |
(EST) |
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| AtFORMIN2 |
gb|AC0022333 |
gb|AAB64026 |
28 161...26 738; |
894 |
Genomic |
II |
3 |
AtORF1 in [6] |
| (gb|AI997606) |
26 653...26 466; |
(EST) |
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| 26 314...26 061; |
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| 25 979...25 161 |
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| (R) |
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| AtFORMIN3 |
emb|Z97338 |
gb|CAB10299 |
30 407... 30 285; |
589 |
Genomic |
IV |
6 |
Sequencing error at |
| 30 171... 29 688; |
the 5' end leading to |
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| 29 608... 29 146; |
ORF truncation? |
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| 29 075... 28 870; |
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| 28 800... 28 683; |
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| 28 602... 28 566; |
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| 28 485... 28 147 |
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| (R) |
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| AtFORMIN4 |
gb|AC002396 |
gb|AAC00575 |
28 830... 29 848; |
825 |
Genomic |
I |
3 |
ORF extends 15 base |
| (gb|AI998115) |
29 951... 30 296; |
(EST) |
pairs upstream of the |
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| 30 542...31 218; |
reported ATG; |
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| 31 885... 31 320 |
alternative splicing |
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| possible |
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| AtFORMIN5 |
dbj|AB016879 |
67 574... 67 401; |
705 |
Genomic |
V |
5 |
Alternative splicing |
|
| 66 710... 66 520; |
possible |
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| 66 171... 66 092; |
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| 66 004... 65 389; |
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| 65 298... 65 099; |
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| 64 637... 63 784; |
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| (R) |
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| AtFORMIN6 |
dbj|AB013390 |
6 001... 7 470; |
910 |
Genomic |
V |
3 |
||
| (emb|F19772) |
7 550... 7 757; |
(EST) |
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| 8 244... 8 506; |
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| 8 587... 9 378 |
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| AtFORMIN7 |
gb|AC007258 |
gb|AAD39332 |
121 331... 120 011; |
929 |
Genomic |
I |
I |
|
| 122 896...121 428;(R) |
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| AtFORMIN8 |
dbj|AB025639 |
41 595... 39 722; |
1051 |
Genomic |
III |
3 |
||
| (emb|Z181512) |
39 635... 39 430; |
(EST) |
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| 39 248... 39 004 |
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| 38 919... 38 092 |
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| (R) |
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|
|
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|
* ORF coordinates refer to the longest putative ORF in the first sequence (first primary accession) listed. (R), reverse complement. † The OFR size is given in codons. ‡ Chr, chromosome number. |
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|
Cvrcková Genome Biology 2000 1:research001.1 doi:10.1186/gb-2000-1-1-research001 |
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