Table 1 |
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|
Putative formin-related genes of Arabidopsis thaliana |
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|
Protein |
Number |
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|
Primary |
sequence |
ORF |
ORF |
of |
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|
Gene |
accession |
accession |
location* |
size† |
Type |
Chr‡ |
introns |
Notes |
|
AtFORMIN1 |
gb|AC002062 |
gb|AAB61101 |
47 640...48 637; |
760 |
Genomic |
I |
I |
AtORF2 in [6] |
|
(emb|T43335) |
48 716...50 000 |
(EST) |
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|
AtFORMIN2 |
gb|AC0022333 |
gb|AAB64026 |
28 161...26 738; |
894 |
Genomic |
II |
3 |
AtORF1 in [6] |
|
(gb|AI997606) |
26 653...26 466; |
(EST) |
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|
26 314...26 061; |
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|
25 979...25 161 |
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|
(R) |
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|
AtFORMIN3 |
emb|Z97338 |
gb|CAB10299 |
30 407... 30 285; |
589 |
Genomic |
IV |
6 |
Sequencing error at |
|
30 171... 29 688; |
the 5' end leading to |
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|
29 608... 29 146; |
ORF truncation? |
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|
29 075... 28 870; |
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|
28 800... 28 683; |
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|
28 602... 28 566; |
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|
28 485... 28 147 |
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|
(R) |
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|
AtFORMIN4 |
gb|AC002396 |
gb|AAC00575 |
28 830... 29 848; |
825 |
Genomic |
I |
3 |
ORF extends 15 base |
|
(gb|AI998115) |
29 951... 30 296; |
(EST) |
pairs upstream of the |
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|
30 542...31 218; |
reported ATG; |
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|
31 885... 31 320 |
alternative splicing |
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|
possible |
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|
AtFORMIN5 |
dbj|AB016879 |
67 574... 67 401; |
705 |
Genomic |
V |
5 |
Alternative splicing |
|
|
66 710... 66 520; |
possible |
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|
66 171... 66 092; |
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|
66 004... 65 389; |
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|
65 298... 65 099; |
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|
64 637... 63 784; |
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|
(R) |
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|
AtFORMIN6 |
dbj|AB013390 |
6 001... 7 470; |
910 |
Genomic |
V |
3 |
||
|
(emb|F19772) |
7 550... 7 757; |
(EST) |
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|
8 244... 8 506; |
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|
8 587... 9 378 |
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|
AtFORMIN7 |
gb|AC007258 |
gb|AAD39332 |
121 331... 120 011; |
929 |
Genomic |
I |
I |
|
|
122 896...121 428;(R) |
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|
AtFORMIN8 |
dbj|AB025639 |
41 595... 39 722; |
1051 |
Genomic |
III |
3 |
||
|
(emb|Z181512) |
39 635... 39 430; |
(EST) |
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|
39 248... 39 004 |
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|
38 919... 38 092 |
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|
(R) |
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|
|
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|
* ORF coordinates refer to the longest putative ORF in the first sequence (first primary accession) listed. (R), reverse complement. † The OFR size is given in codons. ‡ Chr, chromosome number. |
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|
Cvrcková Genome Biology 2000 1:research001.1 doi:10.1186/gb-2000-1-1-research001 |
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