An overview of the structures of protein-DNA complexes
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* Corresponding author: Janet M Thornton thornton@biochem.ucl.ac.uk
Genome Biology 2000, 1:reviews001-reviews001.37 doi:10.1186/gb-2000-1-1-reviews001
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BioMed Central: 8 citations
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Research article
Benchmarks for flexible and rigid transcription factor-DNA docking RyangGuk Kim, Rosario I Corona, Bo Hong, Jun-tao Guo BMC Structural Biology 2011, 11:45 (1 November 2011) |
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Database
The Protein-DNA Interface database Tomás Norambuena, Francisco Melo BMC Bioinformatics 2010, 11:262 (18 May 2010) |
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Proceedings
DNA-binding residues and binding mode prediction with binding-mechanism concerned models Yu-Feng Huang, Chun-Chin Huang, Yu-Cheng Liu, Yen-Jen Oyang, Chien-Kang Huang BMC Genomics 2009, 10(Suppl 3):S23 (3 December 2009) |
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Research
PDA: an automatic and comprehensive analysis program for protein-DNA complex structures RyangGuk Kim, Jun-tao Guo BMC Genomics 2009, 10(Suppl 1):S13 (7 July 2009) |
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Software
TFCat: the curated catalog of mouse and human transcription factors Debra L Fulton, Saravanan Sundararajan, Gwenael Badis, Timothy R Hughes, Wyeth W Wasserman, Jared C Roach, Rob Sladek Genome Biology 2009, 10:R29 (12 March 2009) TFCat is a catalog of mouse and human transcription factors based on a reliable core collection of annotations obtained by expert review of the scientific literature |
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Research
Evolutionary conservation of DNA-contact residues in DNA-binding domains Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chian Chen, Yuh-Jyh Hu, Jinn-Moon Yang BMC Bioinformatics 2008, 9(Suppl 6):S3 (28 May 2008) |
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Research article
Identification of DNA-binding proteins using support vector machines and evolutionary profiles Manish Kumar, Michael M Gromiha, Gajendra PS Raghava BMC Bioinformatics 2007, 8:463 (27 November 2007) |
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Research article
Coding limits on the number of transcription factors Shalev Itzkovitz, Tsvi Tlusty, Uri Alon BMC Genomics 2006, 7:239 (19 September 2006) |