Table 1

The three gene clusters from unsupervised shaving

Gene number

Clone ID

Description

Cluster 1

2866

"139009"

"Fibronectin I"

2867

"358168"

"Unknown UG Hs. 106127 ESTs, Highly similar to (defline not available 4689136) [H. sapiens]"

2868

"323656"

"MMP-2=Matrix metalloproteinase 2=72 kD type IV collagenase precursor=72 kD gelatinase=gelatinase A=TBE-1"

2907

"897910"

"OSF-2os=osteoblast-specific factor=putative bone adhesion protein with homology with the insect protein fasciclin 1"

2869

"359412"

"Cyclin D2/KIAK0002=overlaps with middle of KIAK0002 cDNA"

2871

"754106"

"TIMP-3=Tissue inhibitor of metalloproteinase 3"

2865

"526335"

"MMP-9=Matrix metalloproteinase 9=92 kD Gelatinase B=92 KD type IV collagenase"

2870

"487878"

"osteonectin=SPARC=basement membrane protein"

Cluster 2

2820

"753794"

"BLC=BCA-1=B lymphocyte chemoattractant BLC=CXC chemokine"

785

"1334260"

"Unknown UG Hs. 120716 ESTs"

2521

"713158"

"Unknown UG Hs.89104 ESTs"

801

"701361"

"Similar to FXI-TI =FX-induced thymoma transcript"

2720

"814655"

"Similar to retinol dehydrogenase type 1 (RODH 1)"

2721

"701122"

"Unknown UG Hs.119410 Homo sapiens cytokine receptor related protein 4 (CYTOR4) mRNA, complete cds"

2522

"1272196"

"IRF-4=LSIRF=Mum l=homologue of Pip=Lymphoid-specific interferon regulatory factor =Multiple myeloma oncogene 1"

2659

"685177"

"PTP-1 B=phosphotyrosyl-protein phosphatase"

774

"701606"

"CD 10=CALLA=Neprilysin=enkepalinase"

771

"1305913"

"Unknown UG Hs.106771 ESTs"

432

"417048"

"Similar to human endogenous retrovirus-4"

781

"1367994"

"myb-related gene A=A-myb"

2539

"182764"

"EB12=Epstein-Barr virus induced G-protein coupled receptor=Putative chemokine receptor"

757

"683405"

"SA3=nuclear protein"

793

"1353041"

"Unknown 166"

2494

"1357360"

"Cyclin D2/KIAK0002=3\325 end of KIAK0002 cDNA"

2929

"469297"

"DECI=basic helix-loop-helix protein"

728

"1338981"

"Unknown UG Hs.l 37038 EST"

2656

"814768"

"Unknown UG Hs.l 93857 ESTs"

787

"1338448"

"Unknown UG Hs.224323 ESTs, Moderately similar to alternatively spliced product using exon 13A [H. sapiens]"

720

"815539"

"JAWI=lymphoid-restricted membrane protein"

772

"700718"

"Unknown UG Hs.202588 ESTs"

777

"1352112"

"FMR2=Fragile X mental retardation 2=putative transcription factor=LAF-4 and AF-4 homologue"

Cluster 3

546

"725263"

"immunoglobulin kappa light chain"

547

"1172268"

"HKG7=cell surface protein in NK and T cells=G-CSF-induced gene"

The first value given is the gene number in the set of 3624. The second value is the ClonelD. Cross-referencing of this Clone ID with the Accession number is available in the data tables at http://llmpp.nih.gov/lymphoma/data.shtml

Hastie et al. Genome Biology 2000 1:research0003.1-research0003.21   doi:10.1186/gb-2000-1-2-research0003