Email updates

Keep up to date with the latest news and content from Genome Biology and BioMed Central.

Research news

A cell of few modes

William Wells

Author Affiliations

Genome Biology 2000, 1:spotlight-20000721-01  doi:10.1186/gb-spotlight-20000721-01


The electronic version of this article is the complete one and can be found online at:


Published:21 July 2000

© 2000 BioMed Central Ltd

Research news

In the July 18 Proceedings of the National Academy of Sciences Holter et al. subject existing microarray gene expression data to a kind of spectral analysis (Proc. Natl. Acad. Sci. USA 2000, 97:8409-8414). This process of singular value decomposition (SVD) yields a set of "characteristic modes" that, when summed, reconstitute the entire expression pattern. But Holter et al. find that just two or three of the modes are sufficient to describe the vast majority of the expression data. This shows that expression patterns are simple, usually undergoing a single "on to off" or "off to on" transition in response to a perturbation. Analysis of cell cycle data suggests that generally genes are not activated or repressed in large, discrete groups, as previously thought, but that cell cycle progression is a smooth function with roughly equal numbers of expression changes per unit time.

References

  1. [http://www.pnas.org/] webcite

    Proceedings of the National Academy of Sciences

  2. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

    PubMed Abstract | Publisher Full Text | PubMed Central Full Text OpenURL