Table 1 |
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|
Assignment of proteins to COGs |
||
| Category |
A. pernix |
P. abyssi |
|
|
||
| Proteins assigned by COGNITOR |
1,123 |
1,421 |
| Proteins included in COGs* |
1,102 |
1,404 |
| True positives |
1,062 |
1,381 |
| Pre-existing COGs |
1,011 |
1,339 |
| New COGs |
27 |
3 |
| Divided† |
24 |
39 |
| False positives |
44 |
31 |
| Not accepted |
21 |
17 |
| Reassigned to a related COG |
21 |
14 |
| Reassigned to an unrelated COG |
2 |
0 |
| False negatives‡ |
17 |
9 |
|
|
||
|
*Includes true positives, reassigned false positives, and false negatives. †Not included in 'To preexisting COG' or 'To new COG' numbers. ‡Proteins added during manual checking. |
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|
Natale et al. Genome Biology 2000 1:research0009.1 doi:10.1186/gb-2000-1-5-research0009 |
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