Table 3

Classification of putative protein-coding genes of Rhizobium sp. NGR234 cured of its symbiotic plasmid (= ANU265)

Clone
Homolog description
Clone
Homolog description
No.
Name

No.
Name


Cell envelope and cellular processes


53
26d04
sugar transp. ATP-binding prot.
Cell wall


54
26h11
sugar transp. ATP-binding prot.
1
01d07
N-acetylmuramoyl-L-alanine amidase
55
05b03
sugar transp. system permease prot.
2
06g04
N-acetylglucosamine-1-phosphate uridyl Tase
56
30b08
sugar transp. system permease prot.
3
26b06
UDP-N-acetylenolpyruvoylglucosamine RDase MurB
57
26a07
sugar ABC transp., ATP-binding prot.
4
28f02
UDP-N-acetylmuramate-alanine ligase MurC
58
14e06
xylose transp. permease prot.
5
22b10
UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD
59
03f04
xylose transp. permease prot.
6
29g07
UDP-N-acetylmuramyl-tripeptide synthetase MurE
60
19a04
maltose binding prot.
7
08h05
UDP-N-acetylmuramyl-tripeptide synthetase MurE
61
11c09
membrane bound sugar transp. prot.
8
12f10
outer membrane prot.
62
18a12
sugar transp. ATP-binding prot.
9
17a08
outer membrane prot. Omp28
63
28e01
sugar transp. ATP-binding prot.
10
21h07
group 1 outer membrane prot. OMP1 precursor60
64
30f09
sugar transp. prot.
11
18f12
penicillin-binding prot. 1B
65
01c10
galactoside transp. system permease prot.
12
19h11
penicillin-binding prot. 1A
66
19g07
galactoside transp. ATP-binding prot.
13
29f10
D-alanyl-D-alanine carboxypeptidase
67
21e06
branched-chain amino acid transp.
14
19d01
monofunctional biosynthetic peptidoglycan TGase MtgA
68
29a02
amino-acid ABC transp. permease prot.
15
28f09
lysozyme M1 precursor Acm
69
27b03
amino-acid ABC transp. permease prot.
16
03f07
acriflavine resistance prot. E precursor AcrE
70
05c04
ABC transp. permease prot.
     16a
09h01
overlaps clone 03f07
71
07b05
amino-acid ABC transp. ATP-binding
Transport/ binding proteins and lipoproteins


72
19h08
amino-acid ABC transp. ATP-binding
17
22a03
sugar-binding transp. ATP-binding prot.
73
06a09
amino-acid ABC transp. ATP-binding
18
08h08
ABC transp. ATP-binding prot.
74
11d03
glutamate/ aspartate transp. system permease prot.
19
29c10
sugar ABC transp., permease prot.
75
21d10
high-affinity branched-chain amino acid transp.
20
03f05
inner membrane prot.of trehalose/ maltose transp.
     75a
24a05
overlaps clone 21d10
21
02h10
transp. permease prot.
76
02c01
amino acid ABC transp.
     21a
09f05
overlaps clone 02h10
77
08f08
branched-chain amino acid transp. prot.
22
11c04
ABC transp. permease prot.
78
10e04
branched-chain amino acid transp. prot.
23
12d03
inner membrane ABC transp.
79
17b01
branched-chain amino acid transp. prot.
24
18h08
sugar ABC transp. ATP-binding prot.
80
08g08
branched-chain amino acid transp. prot.
25
21b03
ATP-binding transp. prot.
81
04g02
branched-chain amino acid transp. permease prot.
26
01h04
ATP-binding transp. prot.
82
28h02
high-affinity branched-chain amino acid transp.
27
21b11
ATP-binding transp. prot.
     82a
08a04
overlaps clone 28h02
28
26g01
maltose/ maltodextrin transp. ATP-binding prot.
     82b
11g01
overlaps clone 28h02
29
18g11
sugar ABC transp. ATP-binding prot.
83
16c12
periplasmic dipeptide transp. prot. precursor
30
24e03
ABC transp. ATP-binding prot.
84
03h07
dipeptide ABC transp.
31
02c09
ABC transp. ATP-binding prot.
85
10d11
peptide ABC transp. permease prot.
     31a
12f05
overlaps clone 02c09
86
15e08
ABC transp. ATP-binding prot.
32
28g12
ABC transp. ATP-binding prot.
87
04a06
peptide ATP-bind. transp.
     32a
01a11
overlaps clone 28g12
88
09a09
peptide ABC transp. permease prot.
     32b
09h06
overlaps clone 28g12
89
12c06
peptide ABC transp. permease prot.
33
01a10
ribose transp. ATP-binding prot.
90
03f10
ABC transp.
34
06h03
D-ribose-binding periplasmic prot. precursor
91
22c01
ABC transp. ATP-binding prot.
35
14e04
sugar transp. system permease prot.
92
19b12
ABC transp. ATP-binding prot.
36
18d02
sugar transp. system permease prot.
93
23g09
peptide ABC transp. ATP-binding prot.
37
04e03
sugar transp. system permease prot.
94
18e05
ABC transp. ATP-binding prot.
38
14f09
sugar transp. system permease prot.
95
14d12
oligopeptide ABC transp.
39
08g05
sugar transp. system permease prot.
96
19c05
oligopeptide binding prot.
40
06b09
sugar transp. system permease prot.
97
21g02
peptide ABC transp.
41
19e12
sugar transp. system permease prot.
98
22h09
dipeptide transp. ATP-binding prot.
42
16f12
membrane-spanning permease
99
25c02
oligopeptide transp. ATP-binding prot.
43
26d10
sugar transp. system permease prot.
     99a
23c05
overlaps clone 99
44
23b06
sugar transp. system permease prot.
100
27b09
oligopeptide ABC transp. permease prot.
45
27h12
ABC transp. integral membrane prot.
101
27c09
oligopeptide-binding prot. precursor
46
22d10
ribose ABC transp. permease prot.
102
30a09
oligopeptide transp. ATP-binding prot
47
25a11
sugar transp.
103
03b02
ABC transp., y4wM pNGR234a
48
21a06
sugar transp. ATP-binding prot.
104
03g02
ABC transp., y4wM pNGR234a
49
21b02
sugar transp. ATP-binding prot.
105
07c06
ABC transp., y4wM pNGR234a
50
24d10
galactoside transp. ATP-binding prot. MglA
106
30e02
ATP-binding prot.
51
24e10
lactose transp. system permease prot. LacF
107
05c03
ATP-binding prot.
52
11f10
sugar transp. prot.
108
20e03
ATP-binding prot.
109
19f02
ABC transp. ATP-binding prot.
164
01h09
L-asparagine permease AnsP
110
19d07
ABC transp. ATP-binding prot.
165
29d05
C4-dicarboxylate transp. prot. DctA1 pNGR234a
111
16a07
ATP-dependent transp.
166
20a10
C4-dicarboxylate transp. prot. DctA1 pNGR234a
112
17f05
ABC transp. ATP-binding prot.
167
20c09
chelated iron ABCtransp. ATP-binding prot.
113
09d03
ABC transp. ATP-binding prot.
168
29f01
chelated iron ABCtransp. ATP-binding prot.
114
17h02
putrescine transp. system permease prot.
169
03c12
chelated iron transp. system membrane prot.
115
22e01
inner membrane prot.
170
19a03
chelated iron transp. system membrane prot.
116
02g07
spermidine/ putrescine transmembrane prot.
171
11d07
chelated iron transp. system membrane prot.
     116a
06d04
overlaps clone 02g07
172
26g08
iron transp. prot.
     116b
24b12
overlaps clone 06d04
173
20e11
phosphoenolpyruvate-prot. phosphoTase
117
13b12
putrescine transp. prot.
174
20e12
Na+/H+-exchanging prot. system component
118
06d07
putrescine transp. permease prot.
175
22b06
mannopine-binding periplasmic prot. motA
119
09b07
putrescine transp. permease prot.
     175a
21g06
overlaps clone 22b06
     119a
06b04
overlaps clone 09b07
176
21h10
sulfate transp. system permease prot.
120
24a01
glycine betaine transp. system permease prot
177
29h02
taurin-binding periplasmic prot
121
24f03
glycine betaine transp. system permease prot
178
22d09
cytoplasmic membrane prot. CeoB
122
28c03
glycine betaine / proline transp. prot. ProV
179
28f12
integral membrane prot. (sodium:sulfate symporter)
123
10h02
inner membrane prot.
180
23g03
sulphate transp. system permease prot. CysT
124
03b03
aquaporin Z (bacterial nodulin-like intrinsic prot.)
181
25h07
transp. prot., y4xM pNGR234a
125
03c04
arginine / ornithine antiporter
182
24h07
periplasmic binding prot.
126
03e12
glycerol-3-phosphate-binding periplasmic prot.
183
08c01
lipoprot. LppB/NlpD
127
22g07
glycerol-3-phosphate transp. prot.
     183a
10c07
overlaps clone 08c01
128
05a06
acriflavine resistance lipoprot. A precursor
184
24f12
lipoprot.
129
29h11
acriflavine resistance prot. B
185
23h12
lipoprot.
     129a
15d06
overlaps clone 29h11
186
06a01
outer membrane lipoprot.
130
14b09
acriflavine resistance prot.
     186a
11a05
overlaps clone 06a01
131
14c06
antibiotic resistance prot
     186b
21d02
overlaps clone 11a05
     131a
05c12
overlaps clone 14c06



132
04d08
Leu/ Ile/ Val/ (Thr/Ala)-binding prot. precursor
Sensors (signal transduction)


133
07e02
cytoplasmic prot. CeoB
187
12f09
sensor histidine kinase ExsG
134
01c07
NolH (AcrB/AcrD/AcrF family prot.)
     187a
15d09
overlaps clone 12f09
135
27a10
FixI; E1-E2 type cation ATPase
188
18f03
sensor histidine kinase ExsG
136
12b12
heavy-metal transp.ing P-type ATPase
189
06a07
sensor prot. TctD
137
29f07
cation-transp. ATPase PacS
190
16d05
sensor prot. for potassium transp. KdpD
138
11e02
H+/Ca2+ exchanger
191
06d10
sensor prot. for potassium transp. KdpD
139
01g05
tonB-dependent outer membrane heme receptor HemR
     191a
25f03
overlaps clone 06d10
140
02b10
inner membrane prot., energy transducer TonB
     191b
26d08
overlaps clone 06d10
141
27h11
TonB-dependent transp. ExbD
192
09c11
two-component sensor histidine kinase
142
02b11
nitrite extrusion prot.
     192a
26a04
overlaps clone 09c11
143
08f10
nitrate transp. permease prot. nrtB
193
10f06
C4-dicarboxylate sensor prot. DctB
144
16d07
nitrate transp. prot. NrtD
194
13b09
C4-dicarboxylate sensor prot. DctB
145
09g09
phosphate transp. prot. PhoE
195
14c01
sensor of two-component system FlhS
146
27h09
phosphate transp. prot. PhoT
196
01g04
sensor of two-component system FlhS
     146a
11g03
overlaps clone 27h09
197
15f11
prokaryotic sensory transduction prot.
147
17e11
phosphate transp. prot. PhoT
198
15g02
sensory transduction histidine kinase
148
17c11
phosphate transp. prot. Pit
199
19a06
sensory transduction histidine kinase
149
21a10
phosphate transp. prot. Pit linked to RIME 2
     199a
22d04
overlaps clone 19a06
150
04d06
Pit accessory protein orfA
200
22g10
histidine kinase sensory prot. ExoS
151
12d06
macrolide-efflux determinant
201
23e05
histidine prot. kinase ActS
152
13d04
cation efflux system prot.
202
29f03
sensor kinase NwsA
153
17e08
cation efflux system prot.



154
21e03
ferric siderophore receptor
Membrane bioenergetics (electron transport, etc)


     154a
14c02
overlaps clone 21e03
203
09f04
pyridine nucleotide transhydrogenase sub. a PntA
155
29b02
ferric siderophore receptor
204
02h05
pyridine nucleotide transhydrogenase sub. a PntA
     155a
18g03
overlaps clone 29b02
205
09d11
pyridine nucleotide transhydrogenase sub. a PntA
156
14e12
potassium uptake prot. Kup
206
20h04
pyridine nucleotide transhydrogenase sub. ß PntB
157
14f07
phosphoenolpyruvate-prot. phosphoTase
207
25g07
pyridine nucleotide transhydrogenase sub. ß PntB
158
15f09
ABC transp. ATP-binding prot.
208
13b05
FixN cytochrome CBB3 sub. 1
159
16d04
molybdenum transp. prot.
209
01b04
FixN cytochrome CBB3 sub. 1
160
16g11
periplasmic sulphate binding prot. Sbp
210
08a07
FixS cbb3-type cytochrome oxidase formation prot.
161
04f12
periplasmic sulphate binding prot. Sbp
211
24d07
cytochrome-c oxidase chain IIIB CoxP
162
18b09
drug efflux pump (AcrB/AcrD/AcrF family)
212
05f03
cytochrome BB3 sub. 1 CoxN
163
18d12
tartrate transp. TtuB
     212a
03h10
overlaps clone 05f03
     212b
12g07
overlaps clone 05f03
268
13h11
capsular polysaccharide biosynthesis prot.
213
05f06
cytochrome C oxidase assembly prot. CoxZ
269
08c05
spore coat polysaccharide biosynthesis prot.E
214
05e03
cytochrome C-type biogenesis prot. CycJ/K
270
14d02
ß-(1,2)-glucans production inner-membrane prot. NdvB
215
06d08
cytochrome C-type biogenesis prot. CycH



216
11f02
cytochrome c-type biogenesis prot. CcdA
Mobility / chemotaxis


217
12e03
cytochrome oxidase d, sub. II
271
17a10
(MCP)-glutamate methylesterase CheB
218
11g05
ubiquinol-cytochrome C RDase iron-sulfur sub.
272
05c06
flagellar basal-body (proximal) rod prot. FlgB
219
15e06
cytochrome o ubiquinol oxidase sub. III
273
29g09
flagellar biosynthetic prot. FlhB
220
29e05
cytochrome c small sub. of nitric oxide RDase
     273a
08g10
overlaps clone 29g09
221
06h06
glycolate oxidase iron-sulfur sub. (Fe-S prot.)
     273b
24g01
overlaps clone 08g10
     221a
07e07
overlaps clone 06h06
274
13b08
flagellar biosynthetic prot. FliQ
222
08h10
ATP synthase a-chain
275
12f06
flagellar basal-body MS-ring prot. FliF
     222a
14d10
overlaps clone 08h10
276
14e10
flagellar hook prot. FlgE
     222b
22c06
overlaps clone 14d10
277
14f11
flagellar basal-body (distal) rod prot. FlgG
223
17f07
ATP synthase ?-chain
278
17c05
flagellar C-ring prot. FliG
224
09a12
NADH-ubiquinone oxidoRDase (CI-40 kDa)
279
26d03
flagellar biosynthetic prot. FliP
225
09h02
NADH-ubiquinone oxidoRDase (CI-51kDa)
280
18g10
flagellar basal-body rod prot. FlgF
226
13d12
cyanide insensitive terminal oxidase CioAB
281
27a08
flagellin prot. FlaD
227
01g02
NADH DHase (ubiquinone), sub. 1
282
20h07
new class of flagellar prot. FlmD
228
19b04
NADH DHase
     282a
19b08
overlaps clone 20h07
229
12a01
NADH ubiquinone oxidoRDase
     282b
30a08
overlaps clone 20h07
230
20c11
NADH ubiquinone oxidoRDase
283
07h07
chemotactic transducer for amino acids
231
06e08
NADH ubiquinone oxidorRDase
284
13g03
methyl-accepting chemotaxis prot
232
26e10
NADH ubiquinone oxidoRDase
285
11b02
methyl-accepting chemotaxis prot
233
08g12
NADH ubiquinone oxidoRDase
286
11c06
methyl-accepting chemotaxis prot
234
21h02
NADH ubiquinone oxidoRDase
287
15b10
methyl-accepting chemotaxis prot
235
22a06
NADH ubiquinone oxidoRDase
288
16b03
methyl-accepting chemotaxis prot
236
27c06
NADH ubiquinone oxidoRDase
289
16f10
methyl-accepting chemotaxis prot
237
24b11
electron transfer flavoprotein-ubiquinone oxidoRDase
290
28h04
methyl-accepting chemotaxis prot
238
25a08
glutathione RDase
291
28a12
methyl-accepting chemotaxis prot
239
01h05
thioredoxin
292
27f01
chemotaxis prot. methylTase CheR
240
29a01
thioredoxin RDase
     292a
15e07
overlaps clone 27f01
241
16d03
ferredoxin [2Fe-2S] II
Cell division


242
19f07
ferredoxin-type prot. [4Fe-4S]
293
05f02
cell division prot. FtsH
243
09c06
ferredoxin [3Fe-4S] [4Fe-4S]
294
08d04
cell division prot. FstK
244
26a10
ferredoxin, [2Fe-2S]
295
16b04
cell division prot. FtsK
     244a
05c08
overlaps clone 26a10
296
16e07
septum formation prot. Maf
     244b
18a04
overlaps clone 26a10
297
25f06
cell division inhibitor MinC
Surface polysaccharide - biosynthesis and export


Protein secretion


245
01c04
ExoB UDP-galactose 4-epimerase
298
14c09
ABC transp. type I PrsD
246
03a05
ExoB UDP-galactose 4-epimerase
     298a
06a04
overlaps clone 14c09
247
06a08
ExoN UDP-glucose pyrophosphorylase
299
24e06
ABC transp. type I PrsD
248
07g05
ExoN UDP-glucose pyrophosphorylase
300
11h03
membrane fusion prot. type I PrsE
249
10e08
ExoF exopolysaccharide production prot. precursor
301
29e03
membrane fusion prot. type I PrsE
250
10c12
ExoK endo-ß-1,3-1,4-glucanase
302
06h10
general secretion pathway prot. D precursor XpsD
251
18b08
ExoP succinoglycan transp. prot.
     302a
03e03
overlaps clone 06h10
252
22e05
ExoU succinoglycan biosynthesis glycosylTase
303
12h06
general secretion prot. F XcpS
253
27h01
ExoU succinoglycan biosynthesis glycosylTase
     303a
10c03
overlaps clone 12h06
254
18h12
ExoY exopolysaccharide production prot.
304
29d12
general secretion prot. D GspD
255
25h10
ExoL succinoglycan biosynthesis glycosylTase
     304a
12e11
overlaps clone 29d12
256
17b10
exopolysaccharide production prot. Pss
     304b
10e05
overlaps clone 12e11
257
11a12
KPS production, fatty acid synthase RkpC
305
22g03
general secretion prot. E GspE
258
27f08
KPS modification / export prot. RkpI
306
28g09
pNGR234a, probable translocation prot. RhcT
259
11d09
KPS modification / export prot. RkpJ
307
29b12
preprotein translocase SecA sub.
260
17h04
polysialic acid transp. prot. KpsM



261
21b04
specialized small acyl carrier prot. (lipid A)
Chaperones


262
10c11
N-acetylglucosamine deacetylase (lipid A)
308
10d03
heat shock prot. cnp60 GroEL
263
10b05
3-deoxy-D-manno-octulosonic-acid (Kdo) Tase KdtA
309
21a09
heat shock prot. cnp60 GroEL
264
18f02
3-deoxy-D-manno-octulosonic-acid (Kdo) Tase KdtA
310
26d02
heat shock prot. cnp10 A GroES
265
26h01
3-deoxy-manno-octulosonate cytidylylTase KpsU
311
21a03
heat shock prot. cnp60 GroEL
266
12c02
membrane bound galactosylTase RfpB
312
07c04
small heat shock prot. HspF
267
08h09
O-antigen acetylase
313
14e03
small heat shock prot. (hsp20-2)
     313a
18g01
overlaps clone 14e03
365
21f02
mannonate DTase
314
28f11
18 kd antigen2 (small heat shock prot. Hsp20 family)
366
16g05
alcohol DHase
315
15g09
small heat shock prot. HspE
367
17c02
phosphomannomutase AlgC
316
17b02
DnaJ-like heat shock chaperone prot.
368
17f03
glycogen phosphorylase
317
01e06
heat shock prot. 90 HtpG
369
18d11
phosphoglucomutase
318
23g01
heat shock prot. X HtpX
370
18f01
L-ribulose-P-4-epimerase (AraD/FucA family)
Cell death


371
18h09
triosephosphate isomerase
319
08h11
hemolysin-like prot. TlyC
372
19d03
starch (bacterial glycogen) synthase
     319a
05b05
overlaps clone 08h11
373
20d06
zinc-type alcohol DHase-like prot
320
04h12
cyclolysin (haemolysin-adenylate cyclase toxin)
374
20d08
glutathione-dependent formaldehyde DHase
321
22b07
cyclolysin (haemolysin-adenylate cyclase toxin)
375
20e05
succinate DHase (iron-sulfur prot.)
322
10b08
cyclolysin (haemolysin-adenylate cyclase toxin)
376
20h10
tartrate DHase
323
21g08
cyclolysin (haemolysin-adenylate cyclase toxin)
377
21b06
lactaldehyde DHase
324
12b07
iron-regulated prot. (cytotoxins Ca2+ binding domain)
378
02d12
D-lactate DHase
325
20c02
hemolysin
379
22b08
D-lactate DHase



380
22c08
dihydrolipoamide acetylTase
Intermediary metabolism


381
28b09
dihydrolipoamide DHase
Metabolism of carbohydrates and related molecules


382
30a11
dihydrolipoamide DHase
326
01b09
glucose-6-phosphate isomerase
383
23f06
transketolase
327
24c09
glucose-6-phosphate isomerase
384
23h07
a-glucosidase
328
18g07
glucose-6-phosphate isomerase
385
28a07
D-mannonate oxidoreductase
     328a
20e09
overlaps clone 18g07
386
28c08
glutathione-independent formaldehyde DHase
329
09a03
glyoxylate carboligase
387
29a04
y4uC, pNGR234a, aldehyde-DHase-like prot
330
01c12
a-ketoglutarate DHase
388
29h05
fumarate hydratase
     330a
24d12
Overlaps clone 01c12
389
30b10
mannitol 2-DHase
331
16g02
acetoin:DCPIP oxidoRDase a
390
05d12
isocitrate lyase
332
02e09
acetoin:DCPIP oxidoRDase ß
Metabolism of amino acids and related molecules


333
02e11
succinyl-coA synthetase ß chain
391
27a11
a-isopropylmalate synthase LeuA
334
03e11
ribulose-bisphosphate carboxylase, large sub.
392
27d07
a-isopropylmalate synthase LeuA
335
03h09
citrate synthase
393
14d11
a-isopropylmalate synthase LeuA
336
05b01
L-xylulose kinase
394
14b07
3-isopropylmalate dehydratase small sub.LeuD
337
06c08
dihydoxyacetone kinase
395
25g10
aspartate ammonia-lyase AspA
338
18g08
dihydoxyacetone kinase
396
02c06
aspartate ATase (AspC family)
339
06g05
lipoamide DHase E3 subunit of a-ketoacid DHase complex.
397
02h01
5-methyltetrahydrofolate-homocysteine Tase MetH
340
04g03
alcohol DHase(acceptor) precursor
398
06d09
3-dehydroquinate synthase AroD
341
04h06
malate DHase
399
03c03
3-dehydroquinate synthase AroD
342
09d09
malate DHase
400
18c04
shikimate 5-dehydrogenase AroE
343
07e09
glycogen operon protein (glycosyl hydrolases family)
401
28a08
shikimate 5-dehydrogenase AroE
344
08b07
alcohol DHase
402
02h02
3-dehydroquinate DTase AroQ
345
08e03
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
     402a
20f02
overlaps clone 02h02
346
13a05
glycolate oxidase sub
403
03b05
aspartate aminoTase B
347
09d08
glycolate oxidase sub
404
29b06
aspartate aminoTase B
348
10c06
acetyl-CoA synthetase
405
26d07
aspartate aminoTase
349
11b03
aconitate hydratase (citrate hydro-lyase)
406
11e06
aspartate aminoTase
350
25a09
aconitate hydratase (citrate hydro-lyase)
407
03e05
y4sL pNGR234a, D-amino-acid DHase
351
01b12
2-keto-3-deoxygluconokinase
408
03g10
adenylosuccinate Sase (IMP-aspartate ligase) PurA
352
15a09
ribitol kinase
409
04a04
glutamate 5 -kinase
353
11c02
glucose DHase (pyrroloquinoline-quinone)
410
05d06
N-acyl-L-aminoacid amidohydrolase (aminoacylase)
354
25b01
formaldehyde DHase (glutathione)
411
05e10
assimilatory nitrate RDase sub. NirB
     354a
11c11
overlaps clone 25b01
     411a
05h01
overlaps clone 05e10
355
09a10
ß-glucosidase (cellulose degradation)
412
05g02
3-isopropylmalate DTase large sub. LeuC
356
07a05
ß-glucosidase (cellulose degradation)
413
05g05
class III pyridoxal-phosphate-dependent ATase
357
18b12
ß-glucosidase (cellulose degradation)
414
06a10
threonine deaminase IlvA
     357a
12b03
overlaps clone 18b12
415
26f02
threonine deaminase IlvA
     357b
07f11
overlaps 12b03
416
13g01
acetolactate Sase (acetohydroxy-acid Sase) IlvB
358
12c07
NADP-dependent malic enzyme
417
01b11
acetolactate Sase (acetohydroxy-acid Sase) IlvB
359
12g01
phosphogluconate DHase
418
08b10
dihydroxy-acid DTase IlvD
360
28c02
glutathione-dependent formaldehyde DHase
419
18c03
dihydroxy-acid DTase IlvD
361
04h08
glycerol-3-phosphate DHase
420
06b12
histidinol DHase HisD
362
14g01
glycerol-3-phosphate DHase
421
07a04
N-acetylornithine ATase
363
30f10
glycerol-3-phosphate DHase
422
07b06
low specificity D-threonine aldolase
364
15e12
dTDP-glucose 4-6-DTase
423
08f03
branched-chain a-keto acid DHase component E1
424
30a04
serine acetylTase (CysE/LacA/LpxA/NodL family)
480
12f08
adenylate kinase (ATP-AMP transphosphorylase)
     424a
10c10
overlaps clone 30a04
     480a
09b05
overlaps clone 12f08
425
10e02
anthranilate synthase (tryptophan biosynthesis) TrpE/G
481
11c12
deoxyuridine 5’ triphosphate nucleotidohydrolase
426
30e09
anthranilate synthase (tryptophan biosynthesis) TrpE/G
482
14g07
cytosine deaminase CodA
427
11e05
serine hydroxymethylTase GlyA
483
05e12
phosphoribosylformylglycinamidine synthase PurQ
428
29h12
tryptophan synthase TrpA
484
17b06
phosphoribosylformylglycinamidine synthase PurQ
429
11f03
homoserine DHase
485
15f05
formyltetrahydrofolate deformylase-like prot. PurU
430
11h02
5,10-methylenetetrahydrofolate RDase MetF
486
23e07
phosphoribosylformylglycinamidine PurL
     430a
15a08
overlaps clone 11h02
487
29g10
thymidine kinase
431
11h04
proline DHase PutA



432
18d05
proline DHase PutA
Metabolism of lipids


433
25c05
proline DHase PutA
488
09a01
Nod Factor fatty acyl chain modification NodG
434
12b02
glutaryl-CoA DHase (acyl-coA DHase. family)
489
17c10
3-hydroxydecanoyl-acyl-carrier-prot. DTase FabA
435
12f03
glycine acetylTase
490
03c07
fatty oxidation complex a sub. FadB
436
13h10
homoserine DHase
491
05h03
3-oxoacyl-acyl-carrier-prot. synthase I FabB
437
14f01
ethanolamine ammonia-lyase heavy chain EutB
492
19g02
malonyl CoA-acyl carrier prot. transacylase FabD
438
15b01
2-oxoisovalerate DHase a sub.
493
10b03
3-oxoacyl-acyl carrier prot.synthase II FabF
439
15d01
methionine gamma-lyase Megl
494
22d03
3-oxoacyl-acyl carrier prot. synthase II FabF / NodE
440
19g12
methionine gamma-lyase MegL
495
15c04
3-oxoacyl-acyl-carrier-prot. synthase III FabH
441
16h06
4-hydroxyphenylpyruvate dioxygenase
496
30f01
enoyl-acyl-carrier-prot. Rdase (NADH) FabI
442
19g03
arginine deiminase ArcA
497
01c09
enoyl-CoA hydratase
443
29h06
arginine deiminase ArcA
498
05d10
3-hydroxyisobutyrate DHase
444
29c04
ornithine cyclodeaminase ArcB
499
10h05
long-chain-fatty-acid--CoA ligase RpfB
     444a
17g07
overlaps clone 29c04
500
05g09
acyl-coA DHase
445
23c08
ornithine cyclodeaminase ArcB
501
15e01
acyl-coA DHase
446
18e07
hydroxypyruvate RDase
502
17h07
3-hydroxybutyryl-CoA DHase
447
19d12
asparagine synthetase
503
19c09
3-hydroxybutyryl-CoA DHase
448
19e03
agmatine ureohydrolase SpeB
504
21h04
sulfolipid biosynthesis prot. SqdA
449
19h06
alanine racemase
505
22d05
sub. A of acetyl-coA carboxylase
450
20d07
ornithine/acetylornithine aminoTase
506
01h11
acetyl-CoA carboxylTase ß-sub.
451
21e02
urocanate hydratase HutU



452
21f08
adenosylhomocysteinase
Metabolism of cofactors / prosthetic groups


453
22d08
adenosylhomocysteinase
507
02c03
coenzyme PQQ synthesis prot. C
454
09b12
phosphoglycerate DHase SerA
508
05e02
coenzyme PQQ synthesis prot. E
455
25b12
D-3-phosphoglycerate DHase
     508a
03a08
overlaps clone 05e02
456
22e04
aminotripeptidase PepT
509
03c06
DNA / panthotenate metabolism flavoprot.
457
22e08
4-hydroxybenzoate hydroxylase PobA
510
03e04
dihydroxybenzoate DHase EntA
458
22h10
chorismate mutase / prephenate dehydratase PheA
     510a
10a12
overlaps clone 03e04
459
25c08
diaminopimelate decarboxylase LysA
511
03g11
glutathione Tase
460
06f04
sarcosine oxidase a SoxA
512
05b08
thiamine biosynthesis prot. ThiC
461
25e04
sarcosine oxidase a SoxA
513
03g09
thiamine biosynthesis prot. ThiG
462
01e05
sarcosine oxidase ß SoxB
514
05b12
S-adenosylmethionine: 2-demethylmenaquinonemethylTase
463
03c10
sarcosine oxidase d SoxD
515
12e09
cobyrinic acid a,c-diamide synthase CobB
464
21h08
sarcosine DHase
516
11b11
precorrin isomerase CobH
465
26a01
sarcosine DHase
517
02b03
cobalamin synthesis prot. CobN
     465a
07f10
overlaps clone 26a01
518
05d05
cobalamin/porphyrin biosynthesis prot. CobS
466
21b09
ferredoxin-dependent glutamate Sase GltB
519
28e08
cobalamin synthesis prot. CobT
467
24d04
NADH-glutamate synthase small sub. GltD
520
10d09
glutathione S-Tase Gst
468
13e08
NADPH dependent glutamate synthase small sub. GltX
521
21d03
glutathione synthetase GshB
469
01h06
glutamine synthetase II GlnII
     521a
06b03
overlaps clone 21d03
470
26f03
dihydrodipicolinate synthase DapA
522
06e11
ferrochelatase (protoheme ferro-lyase) HemH
471
27g06
malyl-coA lyase
523
10f10
?-glutamyltranspeptidase precursor
472
28b05
argininosuccinate synthase ArgG
524
10g02
NH (3)-dependent NAD+ Sase NadE
473
30a12
urease accessory prot. (UreD homolog)
525
11e08
riboflavin synthase, ß sub. RibH
474
12h11
4-aminobutyrate aminoTase
526
13e09
pu. amino acid oxidase flavoprot. ThiO
475
30e05
w-aminoTase-like prot
527
13e11
1-deoxyxylulose-5-phosphate Sase
476
15h11
uridylyltransferase/uridylyl-removing enzyme GlnD
528
14d08
4-hydroxybenzoate octaprenylTase (polyprenylTase)
     476a
08e06
overlaps clone 15h11
529
18a08
7,8-diamino-pelargonic acid ATase (DAPA ATase) BioA
477
01e08
hydantoin racemase HyuE
530
19b10
dihydroneopterin aldolase (DHNA) FolB



531
14g12
porphobilinogen deaminase precursor HemC
Metabolism of nucleotides and nucleic acids


532
20a12
uroporphyrinogen decarboxylase HemE
478
02b08
uracil phosphoribosylTase Upp
533
30c03
NH(3)-dependent NAD(+) Sase NadE
479
02e04
formyltetrahydrofolate synthase FthfS
     533a
26c07
overlaps clone 30c03
534
28d07
NH(3)-dependent NAD(+) Sase NadE
     582b
24b02
overlaps clone 21d09
535
22a09
pyridoxal phosphate biosynthetic prot. PdxA
583
15d08
VirB4-like prot., sim. to TrbeB pNGR234a
536
06a02
pyridoxamine kinase
584
06h12
DNA- binding prot. HRm / HU (histone-like prot.)
537
24d01
glutamate 1-semialdehyde 2,1-aminomutase



538
24g03
coenzyme F390 synthetase II
RNA synthesis and modification


539
26a02
molybdopterin biosynthesis prot.
585
07b10
transcription elongation factor GreA
540
29e04
pantothenate synthetase PanC
586
27d08
transcription elongation factor GreA



587
27e10
RNA polymerase a sub. RpoA
Metabolism of phosphate


588
17b03
ribonuclease HII RnhB
541
04f07
inorganic pyrophosphatase Ppa
589
02a01
RNA polymerase ß sub RpoB
     541a
29c05
overlaps clone 04f07
590
03e09
RNA polymerase ß sub RpoB
542
25h01
phosphonate utilization PhnJ
591
06d05
RNA polymerase ß sub RpoB
Metabolism of rhizopine


592
22h12
RNA polymerase ß sub RpoB
543
05a11
MocA oxidoreductase
593
28d10
RNA polymerase ß sub RpoB
544
07d03
MocB rhizopine-binding prot. precursor
594
16b02
RNA polymerase ß ’ sub RpoC
545
15b08
MocB rhizopine-binding prot. precursor
595
04h05
RNA polymerase primary sigma-70 factor RpoD
546
19a12
MocB rhizopine-binding prot. precursor
596
03a11
RNA polymerase sigma-E factor SigH
547
15b06
MocC rhizopine catabolism
597
21b10
RNA polymerase sigma-E factor SigC
548
18c11
MosA rhizopine biosynthesis (dihydrodipicolinate Sase)
598
27f09
RNA polymerase sigma-32 factor RpoH
     548a
04a05
overlaps clone 18c11
599
12c03
probable sigma factor SigI
549
11g06
MocB opine catabolism (phosphogluconate DTase)
600
25f08
probable sigma factor



     600a
25h04
overlaps clone 25f08
Metabolism of sulphur


601
27c10
transcription accessory prot. Tex
550
29b11
phospho-adenylylsulfate sulfoTase CysH
602
25d11
VacB ribonuclease II family
551
17a09
sulfite reductase (hemoprot. sub.) CysI
603
24a12
reverse transcriptase/maturase
Information pathways


Protein synthesis and modification


DNA replication, restriction, modification and repair


604
29h08
GTP-binding prot. (protease) HflX
552
02f12
ribonuclease H RnhA
605
01b01
GTP-binding prot. LepA
553
05e01
DNA polymerase III a sub. DnaE
     605a
20h09
overlaps clone 01b01
554
28f04
DNA polymerase e chain DnaQ
     605b
25g09
overlaps clone 01b01
555
06d12
DNA polymerase III sub. gamma and tau DnaZX
606
01b02
alanyl-tRNA synthetase AlarS
556
08e04
DNA topoisomerase IV sub. A ParC
607
06a11
cystein- tRNA ligase CysS
557
11d02
primosomal replication factor Y PriA
608
26h03
glycyl tRNA-synthetase chain GlyQ
558
08g09
DNA gyrase sub. A (DNA topoisomerase II) GyrA
609
20a08
histidyl-tRNA synthetase HisS
559
14e01
DNA gyrase sub. A GyrA
610
21g03
leucyl-tRNA synthase LeuS
560
12b05
DNA gyrase sub. A GyrA
611
16h08
lysyl-tRNA synthetase LysS
561
23b07
DNA gyrase sub. B GyrB
612
19g05
phenylalanyl-tRNA synthetase chain PheS
562
29f12
DNA gyrase sub. B GyrB
613
25f01
seryl-tRNA synthetase SerS
563
12g08
replication prot. RepB
614
29d09
tryptophan- tRNA ligase TrprS
     563a
02d09
overlaps clone 12g08
615
03g06
tryptophan- tRNA ligase TrprS
564
24g07
DNA polymerase I. PolA
616
10f04
tyrosyl-tRNA synthetase TyrS
     564a
19a01
overlaps clone 24g07
617
22f04
valyl-tRNA synthetase ValS
565
01b07
excinuclease ABC sub. A (DNA repair prot.) UvrA



566
13d07
excinuclease ABC sub. A UvrA
     617a
01f12
overlaps clone 22f04
567
21e12
excinuclease ABC sub. A UvrA
618
10b10
50S ribosomal prot. L2 RplB
568
25d05
excinuclease ABC sub. C UvrC
619
10e10
50S ribosomal prot. L4 RplD
569
18g04
excinuclease ABC sub. C UvrC
620
03h08
50S ribosomal prot. L7/ L12 RplL
570
02a02
excinuclease ABC sub. C UvrC
621
18e03
50S ribosomal prot. L9 RplI
571
18g06
transcription-repair coupling factor Mfd
622
12h01
50S ribosomal prot. L13 RplM
572
04d05
uracil-DNA glycosylase Ung
623
06a03
50S ribosomal prot. L14 RplN
573
07g08
uracil-DNA glycosylase Ung
     623a
20e04
overlaps clone 06a03
574
17d05
type I restriction-modification enzyme M sub. HsdM
624
23h06
50S ribosomal prot. L17 RplQ
575
23g05
type I restriction-modification enzyme M sub. HsdM
625
06c05
50S ribosomal prot. L21 RplU
576
21f03
type I restriction enzyme S sub. HsdS
626
12b06
50S ribosomal prot. L22 RplV



627
29f09
50S ribosomal prot. L33 RpmG
DNA segregation, recombination and transfer


628
17a03
30S ribosomal prot. S1 RpsA
577
10d01
integrase/recombinase
629
25d09
30S ribosomal prot. S1 RpsA
578
11a04
integrase/recombinase
630
13c09
30S ribosomal prot. S2 RpsB
579
14b05
integrase/recombinase (y4qK pNGR234a)
631
29h04
30S ribosomal prot. S3 RpsC
580
30a10
recombination prot. RecA
632
17h03
30S ribosomal prot. S5 RpsE
581
19f08
conjugal transfer prot. TraA
633
13c05
30S ribosomal prot. S12 RpsL
582
21d09
secretory prot. kinase sim. to TrbB pNGR234a
634
22f07
30S ribosomal prot. S15 RpsQ
     582a
05d11
overlaps clone 21d09
635
02b05
30S ribosomal prot. S17 RpsQ
636
12a11
30S ribosomal prot. S21 RpsU
692
14c08
gluconate utilization system repressor; lacI family GntR
637
10f09
30S ribosomal prot. S21 RpsU
693
07e11
transcript. regulatory prot. NtaR; GntR family
638
15f06
ribosomal prot. L11 methylTase PrmA
694
08h12
hydrogen peroxide-inducible activator; lysR family OxyR
639
02c08
y4tL pNGR234a; hydrolase/ peptidase
695
08c08
ribitol operon repressor; lacI family
640
27e11
clp protease ATP binding sub.
696
14f06
transcript. repressor CytR; lacI family
641
06h11
ATP-dependent Clp protease binding sub. ClpA
697
24g11
transcript. repressor; LacI family
642
02e07
ATP-dependent Clp protease binding sub. ClpA
698
22e09
transcript. repressor; LacI family
643
22f12
ATP-dependent Clp protease binding sub. ClpA
699
28g11
transcript. repressor; LacI family
644
02f09
ATP-dependent protease regulatory ATPase sub. ClpB
700
22b04
transcript. repressor; LacI family
645
13a07
ATP-dependent protease regulatory ATPase sub. ClpB
701
17g03
catabolite control prot.; LacI family
646
26f08
ATP-dependent protease regulatory ATPase sub. ClpB
702
18b10
extragenic suppressor prot. SuhB
647
04a02
serine protease, heat shock HtrA like -prot.
703
22b12
extragenic suppressor prot. SuhB
648
10a05
N-carbamyl-L-amino acid amidohydrolase AmaB
704
25d07
transcript. regulator HexA; LysR family
649
18e01
N-carbamyl-L-amino acid amidohydrolase AmAB
     704a
20a07
overlaps clone 25d07
650
26f09
peptide chain release factor 1 PrfA
705
07c07
transcript. regulator HexA; LysR family
651
12a02
peptide chain release factor 3 PrfC
706
10d07
transcript. regulator GstR; LysR family
652
14f04
O-sialoglycoprotein endopeptidase
707
18h01
transcript. regulator GstR; LysR family
653
15d11
periplasmic endopeptidase RmDEGP
708
11f05
transcript. regulator; LysR family
654
05a07
ATP-dependent RNA helicase HelO
     708a
10d08
overlaps clone 11f05
655
16f11
ATP-dependent RNA helicase HelO
709
05e08
transcript. regulator y4mQ pNGR234a; LysR family
656
21f01
translation elongation factor EF-Tu
     709a
16c06
overlaps clone 05e08
657
29d04
translation elongation factor EF-Tu
710
07c01
LysR-type ß-lactamase transcriptional regulator
658
23f05
translation elongation factor EF-G
711
26d11
LysR-type ß-lactamase transcriptional regulator
659
28d12
translation elongation factor EF-Ts
712
26g10
transcriptional regulator; LysR family
660
23b05
ATP-dependent Lon protease
713
20b04
transcriptional regulator TrpI; LysR family
661
01h03
L-isoaspartyl protein carboxyl methylTase
714
21c12
transcriptional regulator TrpI; LysR family
662
26c02
aminoacyl-histidine dipeptidase PepD
715
21f05
sigma-54 dependent transcript. activator 4_Rme
Regulatory functions


716
22a01
transcriptional modulator MgpS
663
05e05
exoenzyme regulatory prot. AepA
717
22a05
transcriptional regulator ChvI
664
07e12
MucR transcriptional regulatory prot.; Ros/mucR family
     717a
26f05
overlaps clone 22a05
     664a
16e11
overlaps clone 07e12
718
22d06
Lrp-like transcript. regulatory4sM pNGR234a
665
29a08
SyrB (syrM repressor, sim.to y4aN, pNGR234a)
719
22g04
leucine-responsive regulatory prot.
666
07f06
sugar fermentation stimulation prot.
720
24d06
phosphoTase enzyme II, A PtsN, nitrogen regulation
667
08f09
two-component response regulator
721
25c01
cell division response regulator DivK
668
25g06
transcript. regulator; XylS/AraC family
722
27c07
response regulator PleD
669
15g01
transcript. regulator; XylS/AraC family
723
25d04
transcript. regulatory4tD pNGR234a ; AsnC family
670
09g10
transcript. regulator of NodD3, sim. to y4fK pNGR234a
724
28b08
LacI-GalR family of regulators, e.g. PckR
671
19c04
transcript. regulator of NodD3, sim. to y4fK pNGR234a
Other categories


672
11c01
transcript. regulator GlxA; XylS/AraC family
Adaptation to atypical conditions and protection


     672a
17g08
overlaps clone 11c01
725
02b01
nodulation competitiveness prot. NfeD
673
10d05
DNA-binding prot., sim. to y4wC/y4aM pNGR234a
726
16b08
choline DHase (osmoregulation) BetA
674
06c07
adenylate cyclase CyaA
727
26e09
choline DHase (osmoregulation) BetA
675
10h04
adenylate cyclase CyaA
728
19c10
betaine aldehyde DHase (osmoregulation) BetB
     675a
17b12
overlaps clone 10h04
729
06h05
choline sulfatase (osmoregulation) BetC
676
27b01
transcript. regulator of sensory transduction systems
     729a
08c12
overlaps clone 06h05
     676a
13f09
overlaps clone 27b01
730
09g04
choline sulfatase (osmoregulation) BetC
677
02e03
phosphate regulatory prot. PhoB
731
13g02
betaine-aldehyde DHase (osmoregulation)
678
01d05
phosphate regulatory prot. PhoU
732
04f08
acid tolerance ActA prot.
679
03f08
pyruvate Dhase complex repressor
733
08c02
copper resistance prot. precursor (detoxification)
680
03g07
regulatory prot. PcaR
734
10f07
catalase (detoxification)
681
05a10
catabolite control prot. A CcpA
735
29c08
epoxide hydrolase (detoxification)
682
08d09
acetate repressor prot.; IclR family
736
29e02
peroxidase / catalase (detoxification)
683
09b11
FixK regulator
     736a
22g02
overlaps clone 29e02
684
28b10
GacA (FixJ-like) response regulator; LuxR/UhpA family
737
19f11
cytochrome P450 (detoxification)
685
14c12
two-component response regulator; LuxR family
738
24b03
nickel resistance prot. NreB
686
17g10
transcript. regulator y4qH pNGR234a, LuxR family
739
24d08
ice nucleation prot. (cold adaptation)
687
28c10
NifR3-like regulator
740
11f07
ice nucleation prot. (cold adaptation)
688
14d06
transcript. regulatory prot. (two-component system)
741
10a08
poly-ß-hydroxybutyrate polymerase PhbC
689
14h07
transcript. activator prot.
742
24f07
poly-ß-hydroxybutyrate polymerase PhbC
690
15c11
transcript. regulator
743
14g10
poly-ß-hydroxybutyrate polymerase PhbC
691
20d01
transcript. regulator; GntR family
744
12a10
survival prot. SurE
     691a
15f07
overlaps clone 20d01
745
28e06
biotin-regulated prot. BioS
746
15b05
6’-aminoglycoside (kanamycin 6’)-N-acetylTase AacA
793
28c01
bacteriophage P22 DNA packaging prot. GP2
747
19d11
arsenate reductase (arsenical pump modifier) ArsC
794
15a01
phage T7 internal virion prot. D
748
05a05
5’-hydroxystreptomycin biosynthesis prot. StrU



749
28e07
haloperoxidase
Miscellaneous





795
27b07
siroheme synthetase-like prot. CysG
Transposon-related functions


796
09h11
indoleacetamide hydrolase (auxin biosynthesis)
750
25f04
ATP-binding prot. y4bM/kI/tA pNGR234a NGRIS-3
797
16e08
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH
751
26c12
ATP-binding prot. y4bL/kJ/tB pNGR234a NGRIS-3
798
18c10
NifS-like prot.
752
22b05
y4bA/pH pNGR234a NGRIS-4
799
12h07
serine/threonine prot. phosphatase
753
06e03
y4bA/pH pNGR234a NGRIS-4
800
29f06
y4vD pNGR234a, peroxiredoxin 2 family
     753a
26e03
overlaps clone 06e03
801
22b03
y4wM pNGR234a, possible binding-prot
754
11c03
y4bA/pH pNGR234a NGRIS-4
802
14c03
MelA, melanin synthesis; 4HPPD family
755
29f05
y4bA/pH pNGR234a NGRIS-4
803
14a03
aldehyde DHase
756
12a08
y4bB/pI pNGR234a NGRIS-4
804
07d01
aldehyde DHase
757
07a07
y4bC/pJ pNGR234a NGRIS-4
805
02f01
aldehyde DHase
     757a
20b11
overlaps clone 07a07
806
05g03
aldehyde DHase
758
11a02
y4bD/pK pNGR234a NGRIS-4
807
03e10
aldehyde DHase
759
23f01
y4ba/pH pNGR234a (NGRRS-1a left) NGRIS-4
808
07c02
aldehyde DHase
760
02e12
transposase y4jA/nE/sE pNGR234a NGRIS-5
809
12h02
betaine / aldehyde DHase
761
11d01
ISRm2011-2 transposase (IS630-Tc1 family)
810
09h07
betaine / aldehyde DHase
762
06d03
ISRm2011-2 transposase (IS630-Tc1 family)
811
29b08
oxidoRDase, sim. to various polyketide synthase
763
17c03
ISRm2011-2 transposase (IS630-Tc1 family)
812
14h02
molybdenum-containing aldehyde oxidoRDase
     763a
28d04
overlaps clone 17c03
813
01e11
oxidoRDase (short-chain type DHase/ RDase)
764
03f02
transposase IS1380
814
06g07
oxidoRDase (short-chain type DHase/ RDase)
765
25h02
transposase IS1380
815
18d03
y4eL pNGR234a, short-chain type DHase/ RDase
     765a
17f06
overlaps clone 25h02
816
06b08
short-chain DHase homolog
766
05h02
transposase IS1594
817
24c07
oxidoRDase
767
17h11
transposase IS200
818
16c05
oxidoRDase
768
26g05
ATP-binding prot. y4iQ/nD/sD pNGR234a NGRIS-5
819
12g04
oxidoRDase
769
17e12
IS1248b orf1; sim. to frag. fs4 pNGR234a NGRIS-9
820
07f05
NADH-dependent flavin oxidoRDase
770
13h02
IS869 orf1; sim. to frag. fs4 pNGR234a NGRIS-9
821
04e11
NADH-dependent flavin oxidoRDase
771
07h02
transposase y4sN pNGR234a NGRIS-9
822
18a09
2-hydroxyacid DHase
772
28h05
IS427 orf4; sim. to y4sN pNGR234a
     822a
21c10
overlaps clone 18a09
773
18e04
transposase IS870.1
823
11b06
chlorophenol-4-monooxygenase component 1
774
19e10
RFRS9 25 kDa prot.
824
09b01
phenylacetic acid degradation prot.
     774a
04e10
overlaps clone 19e10
825
12c05
phenylacetic acid degradation prot.
775
15d07
transposase y4bF pNGR234a
826
24g08
phenylacetic acid degradation prot.
776
18f10
transposase y4qJ pNGR234a
827
09b09
export prot.
     776a
06d11
overlaps clone 18f10
828
16h05
potential multicopper oxidase
777
18c09
transposase y4qJ pNGR234a
829
24h11
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
     777a
22a11
overlaps clone 18c09
830
26d12
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
778
17g01
IS110 family transposase y4uE pNGR234a
831
09a06
ferredoxin RDase (naphthalene conversion)
779
25e06
IS110 family transposase y4uE pNGR234a
832
11f11
Carboxymuconolactone decarboxylase
780
28g06
IS110 family transposase y4uE pNGR234a
833
07b07
biotin / pyruvate carboxylase
781
11d04
IS110 transposase/integrase (C-term)
834
22h07
GTP-binding prot
782
02e10
H- repeat associated prot.
835
22b09
L-sorbose DHase (GMC oxidoRDase family)
783
27d02
H- repeat associated prot.
836
10e01
L-sorbose DHase (GMC oxidoRDase family)
784
06e10
IS-related y4hQ
837
02d05
L-sorbose DHase FAD dependent
785
26h04
IS-related y4hQ
838
24c08
carbon monoxide DHase medium sub.
786
12b01
IS-related y4hP
839
22f10
D-arabino 3-hexulose 6-P formaldehyde lyase
787
12e04
IS-related y4qI
840
27e05
NADH-dependent DHase homolog
     787a
11h07
overlaps clone 12e04
841
28b07
molybdenum-containing quinoline 2-oxidoRDase
788
30b11
IS-related y4qI
842
20e01
DHase sub. precursor
     788a
05h12
overlaps clone 30b11
843
20g03
pterin-4a-carbinolamine DTase
789
04d03
IS-related y4gE
844
21d04
contains hemolysin-type calcium-binding domain
790
20b02
IS-related y4rI
845
16e10
sulfate-starvation induced prot
     790a
25d08
overlaps clone 20b02






Unknown proteins of: (primary accession number)


Phage-related functions


Escherichia coli


791
12h09
symbiosis island integrase (phage P4 family)
846
15g10
P77388
     791a
12h08
overlaps clone 12h09
847
02a07
P32683
792
17b04
bacteriophage P22 DNA packaging prot. GP2
848
02a09
P33362
     792a
06h08
overlaps clone 17b04
849
03e01
P45528
850
03h01
P76631
908
28a02
P96267
851
05g07
P76481
909
08e12
Q50709
852
06h04
P75774
910
22g11
Q11157
853
07f09
P37007
911
10f08
O69646
854
07h06
Q46890
912
11a08
O07756
855
08b02
P21498
913
15c10
O06378
856
08b06
BAA14942
914
16f03
P95223
857
08d12
P39333
915
18e10
P96914
858
13e12
P76641
916
21g05
P72043
     858a
09c08
overlaps clone 13e12
917
25f02
P95223
859
10a03
P45568
918
29h03
O53720
860
10d02
P37675



861
10d04
P42901
Bacillus subtilis


862
10f12
P76481
919
16d09
O34932
863
12c11
P45475
     919a
02a06
overlaps clone 16d09
864
12g02
AAC75037
920
05a01
P94437
865
15e04
P52049
     920a
05g06
overlaps clone 05a01
866
15f04
P77748
921
06c04
P94937
867
16f04
BAA31826
922
06e01
AAB72069
868
17c04
P23522
923
04h03
O32272
869
18g09
AAA83544
924
07f08
AAB35255
870
18h06
AAC74284
925
08a08
BAA06611
871
18h11
P77368
926
17e06
BAA23396
872
19h07
P77165
927
19c11
P54724
873
20a06
P37619
928
11d08
P54178
874
22d02
AAC74824
929
11b08
P39640
875
22e07
AAC44004
     929a
08g04
overlaps clone 11b08
876
22f08
P33362
930
11f08
P96683
877
25f09
P76397
931
09c03
P42966
878
28e04
P76397
932
17f04
O34398
879
25f10
P77470
933
24b07
P35155
880
26e05
AAC74522
934
18c06
O05220
881
27a05
AAC75727
935
24d11
Q07835
882
27e02
P39829
936
13a01
O07618
883
09c12
P37053
937
25a06
P37508
884
28f07
AAC75038
938
21a05
Q45584
885
17d02
P77391
     938a
12b10
overlaps clone 21a05
886
24f10
P76235



887
28f08
P76235
Synechocystis sp.


888
28a06
P39338
939
04a01
BAA17151
889
30e08
P08367
940
06c03
BAA17443
890
27c11
P77165
941
04h11
BAA18318
891
02b12
P75844
942
09g07
BAA18319
892
24h06
P77334
943
13c07
BAA18330
893
22h02
P46854
944
08e11
BAA16904
     893a
21d08
overlaps clone 22h02
945
08f05
BAA17017



946
10e06
BAA17950
Mycobacterium tuberculosis


947
10f05
BAA16766
894
02h04
O05841
948
15h10
BAA18186
895
02h08
O06320
949
25e03
AAB41278



950
26c01
P72872
     895a
08h06
overlaps clone 02h08
     950a
11h09
overlaps clone 26c01
896
03d06
O05865
951
29a07
BAA10710
897
04f10
O53858
952
01c06
BAA10835
898
04h01
O06804



899
07e03
P71838
Haemophilus influenzae


900
19b02
Q10846
953
01c01
P44250
901
19f01
P96814
954
01e07
P31777
902
20c01
O50466
955
06b02
Q57151
903
24h02
O07220
956
13a08
P44093
904
25a05
O06235
957
25h09
P44886
905
25b06
P71984
958
01h02
P44540
906
25h05
O53203
959
22c12
P44543
907
27h05
Q10849
960
19a07
Q57184
Agrobacterium sp.


1005
07d10
Q58322
961
03a07
AAB91569
1006
05a02
Q57883
962
05f01
AAB67296
     1006a
29e09
overlaps clone 05a02
963
28b11
AAB67297
     1006b
17d09
overlaps clone 05a02
964
06b11
AAB51512
1007
06f06
Q46063
965
19e06
AAC17194
1008
07b09
AAB50572
966
09h12
AAB67297
1009
02h03
AAB50572
967
17e09
P70791
     1009a
12e05
overlaps clone 02h03
968
16h09
P70795
1010
04e08
AAC46053
969
01g12
P70795
1011
28h08
AAC46056
970
22b02
P70795
1012
19f10
AAA96787



1013
10g08
BAA29686
Rhizobia


1014
02g03
BAA29099
971
17f01
P55362
     1014a
13b10
overlaps clone 02g03
972
30f11
P55362
1015
11g07
AAC82835
973
16c11
P55388
1016
17e05
P46378
974
30e04
P55424
1017
17h12
AAB51777
975
27b10
P55480
1018
18a11
CAA55879
976
10b09
P55552
1019
18h10
AAB66497
977
12g11
P55552
1020
19f09
AAB85316
978
29e06
P55552
1021
19f12
O52867
979
11d10
P55590
     1021a
23b03
overlaps clone 19f12
980
07c10
P55694
1022
21a11
AAB38705
981
20h08
P55706
1023
21d12
AAB09035
982
02g08
P25893
1024
12d11
AAD03878
983
11f12
P49305
1025
21a04
AAC44077
984
14b08
AAB63673
1026
22f06
AAD03845
985
16b12
AAA74241
1027
16d06
AAD03912
986
16f09
AAA74241
1028
22g06
P70734
987
16c07
AAB4153
1029
22h06
AAC46243
988
09g03
Q52991
1030
05d03
AAC06984
989
07h12
P25893
     1030a
06d06
overlaps clone 05d03
990
22h03
AAA88525
1031
24b01
AAC07457
991
25c11
Q52967
1032
30a07
AAC06721
992
25g03
AAB81416
1033
01a12
P38102
993
20a04
CAA11961
1034
24d02
P55176
994
30e03
CAB01954
1035
28e05
P29938
995
20g09
AAC64871
1036
09c10
AAC44553
996
04f06
AAB17515
1037
26a12
AAB89525
997
22h04
AAB17515
1038
27f04
AAC34291
998
19e07
AAB17514
1039
29c07
C36925
999
05f08
AAA96138
1040
29d11
Q49092
1000
24e08
O69244
1041
11d06
Q15595



     1041a
07a02
overlaps clone 11d06
Other organisms


     1041b
23g10
overlaps clone 11d06
1001
19a11
AAC16153
1042
06h07
P40896
1002
28a01
AAC16139
1043
24d09
P34227
1003
22d01
P30790
     1043a
15f12
overlaps clone 24d09
1004
03g04
Q06373
     1043b
18f08
overlaps clone 15f12

Abbreviations: No, number; prot., protein; sim., similar; sub, subunit; transcript., transcriptional; transp., transport; ATase, aminotransferase; CoA, coenzyme A; DHase, dehydrogenase; DTase, dehydratase; RDase, reductase; Sase, synthase; Tase, transferase; TGase, transglycosylase.

Viprey et al. Genome Biology 2000 1:research0014.1   doi:10.1186/gb-2000-1-6-research0014