Table 6

Sample of the strain similarity matrix

Strain

CXB13

CXB12

CXB11

CXB10

CXB9

CXB8

CXB7

CXB6

CXB5

CXB4

CXB3

CXB2


CXB12

0.55

CXB11

0.44

0.42

CXB10

0.57

0.53

0.40

CXB9

0.35

0.47

0.53

0.50

CXB8

0.52

0.54

0.59

0.51

0.50

CXB7

0.53

0.52

0.53

0.43

0.46

0.67

CXB6

0.53

0.54

0.50

0.49

0.45

0.49

0.53

CXB5

0.51

0.37

0.53

0.47

0.43

0.47

0.46

0.50

CXB4

0.51

0.61

0.52

0.52

0.43

0.49

0.48

0.54

0.48

CXB3

0.47

0.46

0.52

0.51

0.49

0.53

0.49

0.45

0.51

0.49

CXB2

0.58

0.53

0.51

0.40

0.54

0.53

0.52

0.45

0.56

0.45

0.48

CXB1

0.48

0.44

0.51

0.48

0.51

0.42

0.53

0.39

0.43

0.50

0.47

0.43


The fraction of identical genotypes was computed for all two-way combinations of 109 RI strains. Those pairs of strains for which the percentage of shared genotypes was greater than 75% were flagged and one member of the pair was eliminated from the BXN set. Corresponding matrices for AXB- BXA, BXD, BXH and the complete BXN matrix are available online at [30] in text format.

Williams et al. Genome Biology 2001 2:research0046.1-research0046.18   doi:10.1186/gb-2001-2-11-research0046

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