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Evolution of gene order conservation in prokaryotes

Javier Tamames

Genome Biology 2001, 2:research0020-research0020.11 doi:10.1186/gb-2001-2-6-research0020

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BioMed Central: 8 citations

Technical Note   Open Access

Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0

Padmanabhan Mahadevan, Donald Seto BMC Research Notes 2010, 3:41 (23 February 2010)

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Research article   Open Access

Relationship between operon preference and functional properties of persistent genes in bacterial genomes

Marit S Bratlie, Jostein Johansen, Finn Drabløs BMC Genomics 2010, 11:71 (28 January 2010)

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Methodology article   Open Access

Genome classification by gene distribution: An overlapping subspace clustering approach

Jason Li, Saman K Halgamuge, Sen-Lin Tang BMC Evolutionary Biology 2008, 8:116 (23 April 2008)

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Software   Open Access Highly Accessed

PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes

Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell J Brittnacher BMC Bioinformatics 2008, 9:170 (26 March 2008)

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Research article   Open Access Highly Accessed

Persistence drives gene clustering in bacterial genomes

Gang Fang, Eduardo PC Rocha, Antoine Danchin BMC Genomics 2008, 9:4 (7 January 2008)

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Proceedings   Open Access

Gene function prediction based on genomic context clustering and discriminative learning: an application to bacteriophages

Jason Li, Saman K Halgamuge, Christopher I Kells, Sen-Lin Tang BMC Bioinformatics 2007, 8(Suppl 4):S6 (22 May 2007)

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Research article   Open Access

Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study

Mircea Podar, Jonathan R Eads, Toby H Richardson BMC Evolutionary Biology 2005, 5:42 (6 August 2005)

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Differences between the functions of microbial nitrilases are associated with the genetic neighbourhood of individual subfamily members, suggesting that nitrilases have been recruited to new metabolic pathways following gene duplication and neofunctionalization.

Research   Open Access

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

Kyeong Jeong, Jaeyong Ahn, Arkady B Khodursky Genome Biology 2004, 5:R86 (27 October 2004)

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Analysis of the transcriptional activity in Escherichia coli K12 revealed an asymmetry in the distribution of transcriptional patterns along the bacterial chromosome and showed that spatial patterns of transcription could be modulated pharmacologically and genetically.

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