|
Homology with mitochondrial DNA |
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| Clone names |
Homology to normal |
Homologous |
Homology to |
Chromo- |
Homologous |
In between |
Distance |
| database (identity), |
region, extent |
human clone |
some |
region, extent |
markers |
from P-tel |
|
| accession number |
of similarity |
(HTGS) |
of similarity |
(kb) |
|||
| (bp)*, identity |
accession |
(bp)*, identity |
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| (bp/bp)† |
number |
(bp/bp)† |
|||||
|
|
|||||||
| 34-18, 356 bp |
L00016.1 Hs urf4 |
24-336, 313/313 |
AC021965 |
5 |
35-333, 271/299 |
D5S2400 & |
124831 |
| gene, mitochondrial |
SHGC-141614 |
||||||
| AC008670 |
5 |
24-145, 111/123 |
D5S2056 & AA007G12 |
82616 |
|||
| AC012363 |
2 |
80-246, 136/137 |
stSG60109 & |
30855 |
|||
| RH120618 |
|||||||
| 36-62, 100 bp |
NC_001807.2 Hs |
13-87, 74/76 |
AL160031 |
13 |
18-87, 70/71 |
D13S1223 & DD13s943 |
96955 |
| mitochondrion |
|||||||
| AC008670 |
5 |
30-77, 45/49 |
D5S2408 & EE8-Sp6 |
96746 |
|||
| 5R22, 244 bp |
NC_001807.2 Hs |
19-224, 206/206 |
AC021965 |
5 |
19-217, 169/199 |
D5S2400 & |
124831 |
| mitochondrion |
SHGC-141614 |
||||||
| AC016571 |
5 |
13-269, 253/260 |
RH122707 & stSG3646 |
206852 |
|||
| 36-105, 70 bp |
NC_001807.2Hs |
15-51, 31/36 |
NSH |
NA |
NA |
NA |
NA |
| mitochondrion |
|||||||
| 24-16, 215 bp |
NC_001807 Hs |
1-196, 195/196 |
AC021965 |
5 |
1-196, 178/196 |
D5S2400 & |
124831 |
| mitochondrion |
SHGC-141614 |
||||||
| AC018806 |
5 |
1-167, 151/167 |
D5S409 & H119908 |
90813 |
|||
| 5R16, 56 bp |
NC_001807 Hs |
20-37, 18/18 |
AC055801 |
2 |
19-35, 16/16 |
RH112539 & |
110180 |
| mitochondrion |
D2S2002 |
||||||
| AC010290 |
5 |
37-53,17/17 |
G-7042470 & |
171125 |
|||
| GDB:187625 |
|||||||
| AP000686 1 |
11 |
37-53,17/17 |
RH79933 & DD11S3991 |
176404 |
|||
| 9625, 135 bp |
NC_001807.2 Hs |
16-64, 48/49 |
AC068619 |
17 |
35-114, 66/80 |
NMF |
124848 |
| mitochondrion |
|||||||
| 9639, 179 bp |
NC_001807.2 Hs |
13-169, 137/149 |
AC025380 |
X |
55-140, 72/86 |
stSG9218 & |
78184 |
| mitochondrion |
HSSTS293 |
||||||
| 6085, 111 bp |
NC_001807 Hs |
31-100, 69/70 |
AL359496 |
1 |
31-100, 68/70 |
NMF |
NA |
| mitochondrion |
|||||||
| 36-16, 105 bp |
NC_001807 Hs |
24-82, 57/59 |
AC008670 |
5 |
27-82, 51/56 |
D5S2056 & |
82616 |
| mitochondrion |
A007G12 |
||||||
| 36-100, 342 bp |
NC_001807 Hs |
36-175,140/140 |
AC024033 |
12 |
36-175, 140/140 |
stSG62230 & |
73482 |
| mitochondrion |
172-320, 146/150 |
172-320, 146/150 |
RH47270 |
||||
| AC010270 |
5 |
36-175,140/140 |
D5S2408 & EE8-Sp6 |
96746 |
|||
| 172-320, 146/150 |
|||||||
| 36-34, 72 bp |
NC_001807 Hs |
18-55, 37/38 |
AC021914 |
11 |
21-52, 30/32 |
sTSG4656 & |
26100 |
| mitochondrion |
sts-N93614 |
||||||
| 36-36, 87 bp |
AF134583 Hs |
19-67, 49/49 |
AL049739 |
6 |
26-46, 21/21 |
S78653 & |
39448 |
| mitochondrial |
stSG46623 |
||||||
| DNA-like |
|||||||
| 9694, 150 bp |
L00016.1 Hs urf4 |
19-132, 114/114 |
AC021965 |
5 |
19-121, 95/103 |
D5S2400 & |
124831 |
| gene, mitochondrial |
SHGC-141614 |
||||||
| 34-47, 103 bp |
NC_001807.2 Hs |
16-82, 67/67 |
AC022223 |
5 |
16-82, 67/67 |
RH12239 & |
95113 |
| mitochondrion |
WI-18379 |
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|
*Extent of similarity, the number corresponds to the starting and ending base pair in the respective homologous gene with the EST. †Identity, the number corresponds to the identical base pair of EST/homologous gene. NA, not applicable; Hs, Homo sapiens; Dm, Drosophila melanogaster; Dr, Drosophila radiodurans. NSH, no significant homology (identity less than 20 bases); NMF, no matches found. | |||||||
Maiti et al. Genome Biology 2001 2:research0026.1 doi:10.1186/gb-2001-2-7-research0026 |
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