Table 3 |
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|
Partial homologies with known genes |
|||||||
| Clone |
Homology with |
Homologous |
Homology with |
Chromo- |
Homologous |
In between |
Distance |
| names |
normal database |
region, extent |
human clone |
some |
region, extent |
marker |
from |
| (identity), |
of similarity |
(HTGS), |
of similarity |
P-tel |
|||
| accession |
(bp)*, identity |
accession |
(bp)*, identity |
(kb) |
|||
| number |
(bp/bp)† |
number |
(bp/bp)† |
||||
|
|
|||||||
| 24-17, 389 bp |
AL137022 Histone |
125-145, 21/21 |
NSH |
NA |
NA |
NA |
NA |
| (H3) pseudogene |
|||||||
| 24-4, 323 bp |
AF078904 Zeta |
84-105 bp, 22/22 |
AC058816 |
6 |
1-135,121/122 |
stSN21216 and |
7798 |
| globin gene |
D6S1442 |
||||||
| 26-1, 138 bp |
AE003672 Dm genome |
56-78, 22/23 |
AC022237 |
15 |
1-20, 20/20 |
NMF |
NA |
| scaffold binding protein |
|||||||
| 3R1-2f, 429 bp |
AE001826 Dr R1 |
6-32, 26/27 |
NSH |
NA |
NA |
NA |
NA |
| megaplasmid MP1 |
|||||||
| 36-5, 225 bp |
NM_002888.1Hs |
52-190, 136/139 |
AC025033 |
3 |
51-190,137/140 |
stSG53537 and |
197037 |
| retinoic acid receptor |
R95445 |
||||||
| responder |
|||||||
| 36-50, 104 bp |
NM_014666.1| Hs |
32-84, 48/53 |
AC026407 |
5 |
32-84, 48/53 |
D5S1853 and |
123950 |
| KIAA0171 gene product |
RH101108 |
||||||
| 36-98, 195 bp |
AF068299 |
170-193, 24/25 |
AC069530 |
3 |
164-182 19/19 |
NMF |
NA |
| A. thaliana gamma |
|||||||
| glutamylcysteine |
|||||||
| synthetase gene |
|||||||
| 3R1-32, 182 bp |
AE003819 Dm |
102-121, 20/20 |
NSH |
NA |
NA |
NA |
NA |
| genomic scaffold |
|||||||
| 5R29, 506 bp |
AE003568 Dm |
465-491,26/27 |
NSH |
NA |
NA |
NA |
NA |
| genomic scaffold |
|||||||
| 5R5, 83 bp |
AE003650 Dm |
22-42, 21/21 |
AC027364 |
6 |
19-66, 48/48 |
RH112849 & |
6789 |
| genomic scaffold |
stSG47852 |
||||||
| AC024731 |
11 |
21-117, 90/97 |
NMF |
NA |
|||
| 9010, 440 bp |
AF218906.1 Hs |
215-408,192/194 |
AC015847 |
17 |
215-408,192/194 |
NMF |
NA |
| attractin precursor |
|||||||
| (ATRN) |
|||||||
| 9014, 396 bp |
AF095856 Hs |
373-394, 22/22 |
AL133245.2 |
2 |
109-358,247/250 |
stSG60109 and |
36134 |
| asthmatic clone 4 mRNA |
RH120618 |
||||||
| AC010968 |
2 |
109-358,247/250 |
stSG22421 and |
30222 |
|||
| RH120618 |
|||||||
| 905, 485 bp |
X73004.1Hs EWS gene |
173-415,237/239 |
AF121897 |
21 |
176-415,238/240 |
NMF |
NA |
| 906, 130 bp |
AF144028.1Hs |
19-72, 54/54 |
AC019009 |
14 |
19-67, 49/49 |
NMF |
NA |
| MDM2 gene |
|||||||
| AC022305 |
15 |
19-67, 49/49 |
NMF |
NA |
|||
| 907, 391 bp |
AB026436 Hs for |
12-64, 52/53 |
AL049696.9 |
6 |
92-371,279/280 |
D6S1762 and |
88638 |
| dual specificity |
D6S1856 |
||||||
| phosphatase MKP5 |
|||||||
| 9640, 271 bp |
AB024935 Mus |
106-200, 89/96 |
AC073620 |
12 |
13-249, 237/237 |
RH44840 and |
9861 |
| musculus Sid3177 mRNA |
RH83752 |
||||||
| 9646, 249 bp |
NM_014928.1 Hs |
17-124, 107/108 |
AC006207 |
12 |
17-235, 216/219 |
B568G1/T7 and |
1911 |
| KIAA1046 protein |
D12S2049 |
||||||
| 9667, 262 bp |
AF119664 Hs |
130-216, 86/87 |
AC019214 |
17 |
1-179, 177/179 |
D17S609 and |
87186 |
| Transcriptional regulator |
D17S1769 |
||||||
| protein HCNGP mRNA |
|||||||
| c2s-3, 348 bp |
AF207550 Hs |
49-86, 34/38 |
AC019099 |
Y |
4-286, 252/254 |
DYS215 and |
21795 |
| protein translocase |
DYS197 |
||||||
|
|
|||||||
|
*Extent of similarity, the starting and ending base pair in the respective homologous gene with the EST. †Identity, the number corresponds to the identical base pair of EST/homologous gene. number of base pair identical in EST with homologous gene. NA, not applicable. Hs, Homo sapiens; Dm, Drosophila melanogaster; Dr, Drosophila radiodurans. NSH, no significant homology (identity less than 20 bases); NMF, no matches found. |
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|
Maiti et al. Genome Biology 2001 2:research0026.1 doi:10.1186/gb-2001-2-7-research0026 |
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