Table 4 |
||||||||||||
|
Intron size and sequence of 5' and 3' splice sites |
||||||||||||
|
At ATM |
At VIIIA |
At ATM2 |
At VIIIB |
|||||||||
|
|
|
|
|
|||||||||
|
No. |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
|
|
||||||||||||
|
1 |
137 |
AG GTATTC |
TTTAG AT |
107 |
AG GTATTG |
TAGAG GC |
310 |
AG GTAATT |
TTCAG AA |
179 |
AG GTAAAT |
GCCAG AA |
|
2 |
84 |
AA GTAAGT |
AACAG GT |
88 |
AA GTAAGT |
AACAG GT |
95 |
AT GTGAGT |
CAAAG GT |
81 |
AA GTTCTT |
AGTAG CA |
|
3 |
124 |
AT GTAAGT |
GCTAG AC |
126 |
AT GTAAAT |
GCTAG AC |
91 |
AT GTGAGT |
TACAG AG |
84 |
TA GTAAGT |
TTTAG AG |
|
4 |
109 |
CG GTGGGT |
TCCAG AT |
92 |
AG GTTGGA |
TTCAG TC |
113 |
AG GTGAGG |
AGAAG AG |
226 |
GA GTGAAA |
CTTAG TC |
|
5 |
247 |
AG GTTAGT |
TCCAG CG |
302 |
AG GTTAGT |
TCCAG TG |
121 |
AG GTACGG |
TATAG AG |
159 |
TC GTGAGT |
TGCAG GG |
|
6 |
114 |
TT GTAAGC |
TACAG GG |
643 |
TT GTAAGC |
GACAG GG |
152 |
TT GTGAGA |
CACAG GT |
194 |
TT GTAAGA |
AGTAG TC |
|
7 |
103 |
CT GTAAGT |
TGCAG TT |
89 |
AG GTAACT |
TTCAG GA |
205 |
TT GTAAGT |
GGTAG TC |
196 |
AG GTAACA |
TGCAG AG |
|
8 |
101 |
AG GTAGCT |
AACAG TC |
201 |
AA GTATGG |
TCCAG GT |
151 |
AG GTAACA |
TGTAG AG |
100 |
TG GTACTT |
TATAG GA |
|
9 |
376 |
AG GTATGG |
TGCAG AG |
170 |
AG GTAGGC |
ACCAG GC |
102 |
TG GTAATT |
TGCAG GA |
98 |
AG GTAGAG |
TACAG CT |
|
10 |
101 |
AG GTAATT |
TGCAG GA |
135 |
AT GTATGC |
TGCAG AA |
78 |
AG GTAGAA |
TACAG CT |
97 |
TG GTTTGT |
TTCAG GC |
|
11 |
295 |
AA GTAAGC |
TTCAG GT |
114 |
AG CTAACG |
TCCAG GA |
94 |
AG GTAATG |
TTAAG GT |
75 |
AG GTTCGT |
TTTAG GA |
|
12 |
326 |
AG GTATAT |
TTCAG GC |
207 |
AG GTAATG |
TGCAG AA |
89 |
AG GTTAGT |
TTCAG AA |
123 |
TG GTGATC |
TTCAG GA |
|
13 |
197 |
AT GTATGT |
TGCAG AA |
146 |
TG GTAATA |
CTCAG GT |
82 |
AG GTGGTT |
CTCAG GA |
139 |
TG GTAAGT |
TGCAG AA |
|
14 |
136 |
AG GTAAAG |
TTCAG GA |
192 |
AG GTTGGG |
TTCAG GG |
95 |
AG GTAATT |
AGCAG AA |
126 |
AG GTCAGT |
AATAG GT |
|
15 |
160 |
AG GTATAT |
TGCAG AA |
211 |
AG GTCGTT |
TGGAG AA |
125 |
AG GTCAGT |
TACAG GT |
111 |
TG GTGACA |
TACAG GC |
|
16 |
122 |
AG GTAACA |
ATCAG GT |
86 |
TG GTACTT |
TGCAG AT |
87 |
AG GTAAAG |
TACAG GG |
104 |
TG GTTTGG |
AGTAG AT |
|
17 |
228 |
AG GTGAGT |
TCCAG AG |
85 |
TA GTATTG |
TTCAG TT |
87 |
AA GTAAGC |
CATAG AT |
82 |
AT GTAAGT |
GATAG AT |
|
18 |
87 |
AG GTGACA |
TGCAG AT |
103 |
TG GTAAAA |
TGTAG CA |
82 |
TG GTAAGC |
TGCAG CG |
109 |
TA GTAATC |
TACAG AT |
|
19 |
77 |
AG GTATAA |
TGCAG AT |
88 |
TG GTCCTC |
TGTAG TG |
82 |
AG GTACTT |
TTCAG GA |
85 |
TA GTAAAT |
TGTAG TG |
|
20 |
112 |
AT GTATAA |
TTCAG TT |
83 |
AG GTGGTT |
TTGAG AC |
88 |
AG GTCAAA |
TGCAG AT |
70 |
GC GTCTCT |
TTGAG GT |
|
21 |
250 |
AG GTAAAA |
TGCAG CA |
80 |
AG GTAAGT |
TGCAG AT |
||||||
|
22 |
111 |
AG GTAAAA |
CGCAG AC |
|||||||||
|
At XIG |
At XIH |
At MYA2 |
At XIB |
|||||||||
|
|
|
|
|
|||||||||
|
No. |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
|
|
||||||||||||
|
1 |
168 |
TG GTTATT |
TTCAG CG |
365 |
AT GTGAGA |
TGCAG GC |
330 |
TG GTAAGA |
TACAG GT |
618 |
TG GTAAAA |
TGCAG GT |
|
2 |
103 |
CG GTATGT |
TTCAG GT |
135 |
CA GTTTGA |
TAAAG TT |
100 |
AT GTATGT |
TTCAG GT |
127 |
AA GTATGT |
CACAG GT |
|
3 |
92 |
AT GTGAGT |
ACTAG AC |
137 |
AG GTGAGT |
TCCAG AC |
74 |
AT GTGAGT |
TTCAG AC |
143 |
AT GTGAGT |
TTCAG AC |
|
4 |
90 |
AG GTGCTT |
TATAG AC |
96 |
AG GTGCCT |
GGTAG AC |
102 |
AG GTAATT |
TGCAG AC |
87 |
AG GTAATT |
TGCAG AC |
|
5 |
105 |
AG GTAACT |
TGCAG TC |
98 |
AG GTTATC |
TGCAG TC |
300 |
AG GTGAAA |
TTCAG TC |
201 |
AG GTGAAA |
TACAG TC |
|
6 |
120 |
AG GTGAAT |
TGCAG TC |
123 |
AG GTGTAT |
TGCAG TC |
76 |
AG GTAACC |
TATAG TC |
101 |
AG GTAAGG |
TATAG TC |
|
7 |
274 |
AG GTACAT |
GACAG GA |
289 |
AG GTACAT |
ATCAG GA |
125 |
AA GTAAGT |
TACAG GA |
93 |
AA GTAAGT |
TTCAG GA |
|
8 |
76 |
AG GTAGTT |
GTCAG GA |
83 |
AG GTAACT |
GTCAG GA |
95 |
AG GTAGTT |
TTCAG GA |
81 |
AG GTACCT |
TTTAG GA |
|
9 |
115 |
AT GTGTGT |
TGCAG GT |
101 |
TA GTGAGT |
GTCAG GT |
103 |
AG GTAAAT |
TCCAG CT |
89 |
AT GTAAAT |
TGCAG GT |
|
10 |
111 |
TG GTATGT |
TGTAG GA |
107 |
TG GTATGT |
TTCAG GA |
111 |
TG GTGGGT |
TGCAG GC |
125 |
TG GTGAGT |
TGCAG GC |
|
11 |
300 |
AG GTGCAT |
TTCAG TT |
284 |
AG GTGCTT |
TGCAG TT |
355 |
AG GTGCTT |
TGCAG TT |
417 |
AG GTGCTT |
TGCAG TT |
|
12 |
84 |
AG GTTTGT |
GGCAG CA |
88 |
AG GTTTGT |
GGCAG CA |
91 |
AG GTTTGA |
TGCAG CA |
91 |
AG GTTTTG |
TGCAG CA |
|
13 |
97 |
AG GTAACT |
TTCAG AA |
80 |
AG GTTAGT |
CTCAG AA |
234 |
GA GTCTGT |
TTCAG AA |
243 |
AG GTTATC |
TTCAG AA |
|
14 |
82 |
TG GTAAGC |
TGCAG CA |
87 |
TG GTATGA |
TGCAG CA |
153 |
TG GTGAGT |
TGCAG CA |
123 |
AG GTGAGT |
TGCAG CA |
|
15 |
99 |
AT GTGAGT |
TTCAG GT |
104 |
TA GTGAGT |
TTCAG GT |
117 |
AT GTGAGT |
TCCAG GT |
121 |
AT GTGAGC |
TCCAG GT |
|
16 |
85 |
AG GTGCAG |
TGCAG CA |
82 |
AG GTGCAG |
TGCAG CA |
87 |
AG GTAAGT |
TTCAG CA |
91 |
AG GTGAGT |
TGCAG CA |
|
17 |
92 |
GG GTGAGA |
TTTAG GG |
87 |
GG GTGGGA |
TTCAG GG |
91 |
GG GTGCGA |
TTTAG GG |
98 |
GG GTGCGA |
CACAG GG |
|
18 |
86 |
AG GTATGC |
GCTAG TT |
79 |
AG GTTCCC |
TCTAG TA |
77 |
AA GTAAGA |
AATAG CT |
88 |
AA GTAAGA |
ACTAG TT |
|
19 |
75 |
AG GTACTT |
CACAG AT |
113 |
AA GTACGT |
TCCAG AT |
87 |
AG GTAATT |
TGTAG AT |
93 |
AG GTAATT |
TGTAG AT |
|
20 |
99 |
AG GTATCT |
AACAG GT |
86 |
AG GTACTT |
TGTAG GT |
117 |
AG GTATTT |
GTCAG GT |
88 |
AG GTATTT |
TTCAG GT |
|
21 |
147 |
AG GTGGAG |
CAGAG CC |
147 |
AG GTGCTG |
TACAG AG |
159 |
AG GTACAC |
TATAG AC |
170 |
AG GTATGA |
TACAG AC |
|
22 |
130 |
CG GTGTGC |
TGCAG GA |
296 |
TG GTGAGC |
TGCAG GC |
122 |
TG GTGAGA |
CCTAG GC |
150 |
AG GTGAGA |
CACAG GC |
|
23 |
117 |
GG GTCAGA |
TGTAG GT |
120 |
GG GTAAGT |
TTTAG AC |
125 |
GG GTGTGA |
TGCAG AC |
105 |
GG GTGAGT |
TGCAG AC |
|
24 |
107 |
AG GTAGGG |
TGCAG TC |
119 |
AG GTAGGA |
TTCAG TC |
150 |
AG GTTTGT |
TACAG AG |
120 |
AG GTGGGT |
TGCAG GG |
|
25 |
99 |
AA GTATTC |
TGCAG TC |
94 |
GA GTACCC |
TGCAG AC |
89 |
TG GTATCC |
TCCAG GC |
87 |
AG GTACTG |
TGCAG GC |
|
26 |
84 |
AG GTAGAC |
TTTAG AA |
392 |
CA GTTAAG |
AGGAG AA |
89 |
AG GTAGAA |
TGTAG AA |
90 |
AG GTAGAA |
TGCAG AA |
|
27 |
85 |
CA GTGTAA |
TGCAG GG |
133 |
AG GTACTG |
ATCAG GA |
104 |
AT GTATAT |
TCCAG GA |
106 |
TA GTAGGG |
TTCAG GA |
|
28 |
152 |
AT GTATGT |
TGAAG AG |
89 |
TG GTATAT |
ACCAG GG |
82 |
TT GTATGT |
TGCAG AT |
82 |
TT GTACTG |
TGCAG GA |
|
29 |
85 |
AG GTACTA |
TTTAG GA |
105 |
AG GTCAGC |
TCTAG GC |
181 |
AG GTAATT |
TTCAG AA |
316 |
TG GTAAAT |
TTCAG AA |
|
30 |
97 |
AG GTATAT |
AACAG GG |
73 |
TT GTATGG |
TTCAG GT |
103 |
TG GTTTGT |
ACCAG AG |
86 |
TG GTATTT |
ACCAG AG |
|
31 |
83 |
AG GTGACA |
TCTAG GC |
81 |
AG GTGAGA |
TGTAG CC |
95 |
AG GTTCCT |
TTCAG GC |
158 |
TG GTTTCA |
TTCAG GC |
|
32 |
78 |
TT GTATGT |
TACAG GT |
150 |
TT GTAAAA |
TGCAG TA |
85 |
AT GTAAGG |
TCCAG GT |
77 |
AT GTAAGG |
TACAG GT |
|
33 |
91 |
AG GTGAGA |
TGCAG CC |
128 |
TG GTATGT |
AACAG GT |
78 |
AG GTAAGT |
TACAG TC |
169 |
AG GTAAAT |
AATAG CC |
|
34 |
81 |
AG GTAATC |
GATAG TA |
100 |
CT GTGAGT |
TGCAG AT |
95 |
AA GTAAAA |
GGCAG TA |
74 |
AA GTAAGT |
TGCAG TA |
|
35 |
104 |
TG GTATGT |
AACAG CT |
92 |
AT GTATGC |
AACAG GT |
165 |
AG GTATGT |
TGCAG GT |
90 |
TG GTATGT |
ATCAG GT |
|
36 |
88 |
CA GTAAGT |
CTCAG AA |
101 |
AG GTAACA |
CTTAG CA |
88 |
CG GTAAGG |
TACAG GT |
83 |
CG GTAAAG |
TACAG AT |
|
37 |
89 |
AT GTAAGC |
AATAG GT |
103 |
AA GTACCT |
TGCAG GT |
86 |
AG GTAACT |
AATAG AC |
|||
|
38 |
108 |
AG GTAAGT |
CACAG CA |
156 |
AG GTGAAA |
GACAG CA |
||||||
|
At XID |
At XIA |
At XIF |
At XIC |
|||||||||
|
|
|
|
|
|||||||||
|
No. |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
|
|
||||||||||||
|
1 |
228 |
TG GTACGA |
ATCAG GC |
430 |
TG GTACGA |
TGCAG GC |
89 |
TG GTAAGC |
GTTAG GG |
143 |
AG GTTAGT |
TGTAG GT |
|
2 |
47 |
AG GTACCT |
TGTAG GT |
215 |
CG GTAAGA |
CTTAG GT |
169 |
CA GTAAGA |
TACAG GT |
93 |
AG GTCCAG |
TATAG GT |
|
3 |
173 |
AT GTACGC |
TACAG AC |
134 |
TA GTAAGC |
TCCAG AC |
100 |
TA GTCAGT |
CGCAG AC |
82 |
AT GTTTTG |
GACAG AC |
|
4 |
89 |
AG GTAATC |
TTTAG AA |
91 |
AG GTAACT |
TTCAG GA |
81 |
TG GTAAAA |
ACTAG GG |
95 |
AG GTGAGT |
CTCAG GG |
|
5 |
109 |
AG GTAGAT |
TGCAG TC |
112 |
AG GTAATG |
TGCAG TC |
71 |
AG GTGAGT |
TATAG TC |
93 |
AA GTAATG |
TCCAG TC |
|
6 |
90 |
AG GTGGAA |
TGCAG TC |
93 |
AG GTGGAG |
TGCAG TC |
96 |
AG GTGGTG |
GACAG TC |
83 |
AG GTGAAG |
CTCAG TC |
|
7 |
117 |
AG GTAAAC |
TTCAG GA |
101 |
AG GTAAGC |
TTCAG GA |
84 |
AG GTAAGT |
TTCAG GA |
72 |
AG GTACGT |
AGCAG GA |
|
8 |
68 |
AG GTACCT |
TGTAG GA |
66 |
AG GTACTT |
TGTAG GA |
76 |
TG GTTTGT |
TTTAG GA |
101 |
AG GTCAGT |
AACAG GA |
|
9 |
84 |
AT GTATAT |
GGTAG GT |
86 |
TA GTAAAT |
TGCAG GT |
79 |
TG GTATCT |
CGTAG GT |
174 |
AT GTAAAA |
TTCAG GT |
|
10 |
90 |
GG GTAGGT |
CCCAG GC |
80 |
TG GTAGAT |
TTAAG GA |
264 |
TG GTATGT |
GACAG GA |
74 |
TG GTAAGT |
TCTAG TA |
|
11 |
309 |
AG FTFCTT |
TGCAG TT |
297 |
AG GTGCTT |
TGCAG TT |
79 |
AG GTAGAC |
CAAAG TT |
76 |
AG GTAAAT |
TGCAG TT |
|
12 |
93 |
AG GTTGGA |
TACAG CA |
74 |
AG GTTGGA |
TACAG CA |
72 |
AG GTAGAA |
TGCAG CA |
71 |
AG GTATTG |
TTCAG CA |
|
13 |
113 |
AG GTAAGT |
GTCAG AA |
99 |
AG GTTAGT |
GTCAG AA |
97 |
AG GTATAA |
TTCAG AA |
84 |
TG GTAAAG |
TTCAG CA |
|
14 |
86 |
TG GTAATG |
TACAG TA |
84 |
TG GTAATG |
TGCAG CA |
106 |
TG GTAAGT |
TGCAG CA |
74 |
AA GTAGGT |
TCCAG GT |
|
15 |
105 |
AT GTTAGT |
TTCAG GT |
82 |
AT GTTAGT |
TCCAG GT |
78 |
AT GTGAGA |
TCCAG GT |
154 |
AG GTAGGG |
TGCAG CT |
|
16 |
78 |
AG GTCTAC |
TACAG CA |
214 |
AG GTCTGA |
TACAG CA |
70 |
AG GTAAGC |
CCCAG CA |
135 |
GT GTAAGT |
TCTAG GG |
|
17 |
102 |
GG GTAAGC |
CTCAG GG |
105 |
GG GTAAGC |
TTCAG GG |
90 |
GA GTAAGC |
AACAG GG |
92 |
AG GTAAGT |
AACAG CT |
|
18 |
111 |
AG GTAGAT |
TATAG CT |
128 |
AG GTAGCT |
AATAG CT |
102 |
GG GTAAAA |
GACAG AT |
120 |
AG GTAACG |
TGCAG AT |
|
19 |
152 |
AG GTGCGT |
CACAG AT |
202 |
AG GTGCAG |
CATAG AT |
101 |
AG GTATGT |
TTCAG AT |
114 |
AG GTGAGC |
TGTAG GA |
|
20 |
92 |
AG GTAATA |
TTCAG GA |
83 |
AT GTTATA |
TTTAG GT |
175 |
AG GTTTTT |
TGTAG CA |
88 |
AG GTTTAG |
GGCAG GC |
|
21 |
69 |
TC GTATCT |
CACAG AG |
113 |
AA GTAAGT |
CGCAG AG |
292 |
AG GTACTA |
AACAG AG |
296 |
TG GTACAA |
TTCAG GC |
|
22 |
280 |
TG GTGACT |
TCCAG GC |
256 |
TG GTAATC |
TTCAG GC |
148 |
TG GTAAGT |
CAAAG GC |
79 |
GG GTATTT |
TATAG GG |
|
23 |
86 |
GG GTACAC |
TGCAG AT |
126 |
GG GTACAC |
TGCAG AT |
73 |
AG GTATTG |
ATTAG GC |
114 |
AG GTACTT |
AACAG GT |
|
24 |
72 |
AG GTAAGG |
CTAAG GA |
122 |
AG GTTAGT |
AAAAG GT |
68 |
AG GTAAGT |
TGTAG GT |
105 |
AG GTAAGA |
ATCAG GA |
|
25 |
120 |
CC GTCATT |
CGTAG GC |
114 |
AG GTAAGA |
CTTAG GC |
86 |
AG GTATAC |
TCCAG AT |
96 |
AG GTAAAC |
TACAG AG |
|
26 |
432 |
AC GTAACA |
TACAG GA |
117 |
AG GTAATC |
CTTAG GC |
176 |
AG GTACGG |
ATCAG CC |
92 |
TG GTAAAT |
ATCAG GA |
|
27 |
118 |
AG GTTATC |
TTTAG GC |
87 |
TA GTTAGT |
AACAG GA |
84 |
AG GTGCAA |
TGCAG AA |
88 |
AG GTTGGC |
CTCAG AC |
|
28 |
77 |
AG GTGTCA |
TCAAG AA |
120 |
AG GTTTTG |
TTTAG GC |
70 |
AG GTACGA |
TTCAG GA |
113 |
AG GTGATG |
ATTAG AG |
|
29 |
96 |
AT GTAAGT |
TACAG GA |
79 |
CG GTAAAT |
TGCAG CC |
121 |
AG GTATTA |
GACAG GA |
87 |
AG GTATGC |
AATAG GC |
|
30 |
86 |
AT GTATGT |
TGCAG GA |
105 |
AG GTAAGT |
TACAG GA |
93 |
AG GTAATA |
AGAAG GG |
85 |
AT GTGAGT |
TTTAG GT |
|
31 |
78 |
AA GTTTAA |
CTCAG AA |
88 |
TA GTATGT |
AGCAG GA |
75 |
AA GTAAGC |
TGTAG GG |
103 |
AG GTTTTT |
AACAG CC |
|
32 |
121 |
AG GTAACA |
TTTAG GG |
164 |
AG GTAACC |
TTCAG AA |
93 |
AT GTTAGT |
AACAG GC |
70 |
AG GTATCT |
TTCAG TA |
|
33 |
360 |
AG GTAGAA |
CTGAG GA |
147 |
TG GTAACG |
TTTAG GG |
85 |
AT GTAAAA |
TCCAG GT |
79 |
TG GTAACC |
TACAG GT |
|
34 |
109 |
AC GTAAGA |
CTCAG AA |
92 |
TG GTATAC |
TTCAG AG |
82 |
AG GTACAA |
GGCAG TT |
148 |
CG GTAAGT |
GACAG GT |
|
35 |
97 |
AG GTAAAA |
TGCAG CC |
67 |
AC GTAAGA |
TTCAG GT |
97 |
AG GTAGGC |
TACAG GC |
97 |
AC GTAAGT |
AATAG GT |
|
36 |
87 |
AT GTAAGT |
TGCAG TT |
97 |
TG GTTATT |
TGCAG TC |
84 |
TG GTATAG |
TACAG GT |
74 |
AG GTTGTT |
TGCAG CA |
|
37 |
98 |
TG GTCAGT |
TCCAG GT |
76 |
AG GTAAAA |
TGCAG TT |
230 |
CG GTAAAG |
CTCAG GT |
|||
|
38 |
125 |
CG GTAACT |
CTCAG GC |
78 |
TG GTTTGT |
TTCAG GT |
123 |
AG GTAAGT |
AATAG GT |
|||
|
39 |
84 |
AC GTATGT |
TGCAG GT |
206 |
CG GTAAGT |
GTCAG GT |
70 |
AG GTACGC |
TTCAG CA |
|||
|
40 |
91 |
AG GTATTG |
CTCAG CA |
79 |
AG GTACAT |
TGCAG GT |
||||||
|
41 |
84 |
AG GTACTG |
AACAG CA |
|||||||||
|
At XIE |
At XIJ |
At MYA1 |
At XI-I |
|||||||||
|
|
|
|
|
|||||||||
|
No. |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
Size |
5' site |
3' site |
|
|
||||||||||||
|
1 |
111 |
CA GTGACT |
TGCAG GG |
120 |
AT GTAAA |
GTCAG GT |
330 |
TG GTAAGA |
TACAG GT |
134 |
AG GTCTGA |
AAAAG CT |
|
2 |
86 |
AG GTGAGT |
TGTAG AT |
117 |
AT GTAAGA |
GACAG AC |
100 |
AT GTATGT |
TTCAG GT |
860 |
AT GTGAAC |
TTCAG AC |
|
3 |
80 |
AT GTTAGT |
GACAG AC |
85 |
AG GTGATT |
AACAG GG |
74 |
AT GTGAGT |
TTCAG AC |
95 |
AG GTGATC |
CCCAG AG |
|
4 |
80 |
AG GTGCTC |
TTCAG GG |
292 |
AA GTAAGT |
TACAG TC |
102 |
AG GTAATT |
TGCAG AC |
181 |
AA GTAAGA |
TGCAG TC |
|
5 |
116 |
AA GTATGA |
GGCAG TC |
135 |
AG GTAAAC |
TACAG CC |
300 |
AG GTGAAA |
TTCAG TC |
241 |
AG GTGGGT |
TTCAG CC |
|
6 |
85 |
AG GTGAAA |
GTCAG AT |
72 |
AG GTAGGT |
TGCAG GA |
76 |
AG GTAACC |
TATAG TC |
149 |
AT GTAATT |
CTTAG GA |
|
7 |
75 |
AG GTATAC |
ACTAG CA |
88 |
AG GTTTGC |
TTCAG GA |
25 |
AA GTAAGT |
TACAG GA |
90 |
AG GTATAA |
ATCAG GA |
|
8 |
79 |
AG GTAAGC |
AACAG GA |
67 |
AT GTAATA |
TTTAG GT |
95 |
AG GTAGTT |
TTCAG GA |
91 |
AA GTACAT |
ATCAG GT |
|
9 |
76 |
AT GTAAGT |
TTTAG GT |
91 |
TG GTAAAT |
TCCAG GT |
103 |
AG GTAAAT |
TCCAG CT |
94 |
TG GTTTGC |
GTCAG GC |
|
10 |
101 |
TG GTAAGT |
TGCAG GT |
315 |
AG GTGATG |
TGCAG TT |
111 |
TG GTGGGT |
TGCAG GC |
135 |
AG GTTAGC |
TGCAG TT |
|
11 |
86 |
AG GTAAGG |
TGCAG TT |
81 |
AG GTATGA |
TACAG CA |
355 |
AG GTGCTT |
TGCAG TT |
83 |
AG GTAATA |
TTCAG CA |
|
12 |
88 |
AG GTAATT |
TTCAG CA |
440 |
AG GTTTGT |
TGCAG AA |
91 |
AG GTTTGA |
TGCAG CA |
717 |
AG GTCGTT |
TGCAG AA |
|
13 |
115 |
AG GTTATT |
AGCAG AA |
110 |
TG GTATAA |
TGCAG CA |
234 |
GA GTCTGT |
TTCAG AA |
85 |
TG GTACAA |
TGCAG CA |
|
14 |
91 |
TG GTAATA |
TTCAG CA |
88 |
AT GTAAGT |
TTCAG GT |
153 |
TG GTGAGT |
TGCAG CA |
98 |
AA GTCTTG |
TGAAG CC |
|
15 |
103 |
AA GTAAGT |
TTCAG GT |
138 |
AG GTGACT |
TGCAG CT |
117 |
AT GTGAGT |
TCCAG GT |
127 |
AG GTAGAG |
TTTAG CA |
|
16 |
70 |
AG GTAGAT |
GATAG TT |
75 |
GG GTCTGT |
TGCAG GG |
87 |
AG GTAAGT |
TTCAG CA |
547 |
GG GTTAGT |
GATAG CC |
|
17 |
107 |
GT GTAAGT |
TGTAG GG |
106 |
GA GTATGT |
ATCAG GT |
91 |
GG GTGCGA |
TTTAG GG |
302 |
AG GTACGA |
TGCAG CA |
|
18 |
85 |
AA GTAAGT |
AACAG CT |
154 |
AG GTAAAG |
TGCAG AT |
77 |
AA GTAAGA |
AATAG CT |
95 |
AG GTATGG |
CACAG CT |
|
19 |
92 |
AG GTTTTT |
TGCAG GT |
99 |
AG GTGAGG |
TTTAG GA |
87 |
AG GTAATT |
TGTAG AT |
269 |
AG GTTCCT |
GCAAG GA |
|
20 |
157 |
AG GTGAAC |
TATAG GA |
99 |
AG GTTCTA |
TGCAG GC |
117 |
AG GTATTT |
GTCAG GT |
180 |
AG GTACTT |
TTTAG GC |
|
21 |
88 |
AG GTTTTA |
TGCAG GC |
119 |
AG GTATTG |
TATAG GC |
159 |
AG GTACAC |
TATAG AC |
96 |
AG GTATGA |
TGCAG GT |
|
22 |
184 |
TG GTACGT |
TTCAG GC |
134 |
AG GTAATG |
TTCAG GC |
122 |
TG GTGAGA |
CCTAG GC |
80 |
GA GTATGT |
TACAG AC |
|
23 |
90 |
GG GTATTT |
GTCAG GT |
130 |
AG GTATTA |
TCCAG GT |
125 |
GG GTGTGA |
TGCAG AC |
701 |
AG GTAATT |
CACAG AA |
|
24 |
164 |
AG GTACTC |
AACAG GC |
197 |
AG GTCAGT |
TGCAG GA |
150 |
AG GTTTGT |
TACAG AG |
88 |
AG GTTTGT |
TTCAG TC |
|
25 |
125 |
AG GTAAGT |
GTCAG GC |
89 |
TG GTATCC |
TCCAG GC |
277 |
AA GTATGT |
AGCAG AA |
|||
|
26 |
95 |
AG GTACGG |
AACAG GT |
89 |
AG GTAGAA |
TGTAG AA |
620 |
TT GTAAGT |
ATCAG GA |
|||
|
27 |
101 |
TG GTAAGT |
ATCAG GA |
104 |
AT GTATAT |
TCCAG GA |
220 |
AG GTGATC |
TGCAG AG |
|||
|
28 |
91 |
AG GTTTGT |
TTCAG AC |
82 |
TT GTATGT |
TGCAG AT |
129 |
AT GTGAGT |
ACCAG GG |
|||
|
29 |
85 |
AG GTGTGT |
TCTAG AG |
181 |
AG GTAATT |
TTCAG AA |
466 |
AG GTGAGA |
GATAG GT |
|||
|
30 |
90 |
AG GTATAT |
AATAG GC |
103 |
TG GTTTGT |
ACCAG AG |
89 |
AG GTAAAT |
TTCAG TC |
|||
|
31 |
86 |
AC GTGAGT |
CTTAG GT |
95 |
AG GTTCCT |
TTCAG GC |
399 |
AG GTACAC |
TATAG GT |
|||
|
32 |
79 |
AG GTCTGT |
TACAG TC |
85 |
AT GTAAGG |
TCCAG GT |
88 |
AG GTGAGT |
TGTAG GT |
|||
|
33 |
92 |
AG GTACAT |
TGCAG GT |
78 |
AG GTAAGT |
TACAG TC |
326 |
AG GTATTA |
TGCAG CA |
|||
|
34 |
78 |
CG GTAAGT |
TGCAG GT |
95 |
AA GTAAAA |
GGCAG TA |
||||||
|
35 |
80 |
AC GTAAGT |
GATAG GT |
165 |
AG GTATGT |
TGCAG GT |
||||||
|
36 |
99 |
AG GTTAGT |
GGCAG TA |
88 |
CG GTAAGG |
TACAG GT |
||||||
|
37 |
103 |
AA GTACCT |
TGCAG GT |
|||||||||
|
38 |
156 |
AG GTGAAA |
GACAG CA |
|||||||||
|
At XIK |
||||||||||||
|
|
||||||||||||
|
No. |
Size |
5' site |
3' site |
No. |
Size |
5' site |
3' site |
No. |
Size |
5' site |
3' site |
|
|
|
||||||||||||
|
1 |
237 |
AA GTGAGT |
CCCAG TC |
14 |
157 |
TG GTAGGC |
TGCAG TA |
27 |
98 |
CG GTAAGG |
CACAG GA |
|
|
2 |
269 |
CC GTAAGT |
TTCAG GT |
15 |
87 |
AG GTATAA |
ATCAG GC |
28 |
110 |
AG GTATCA |
TGCAG GA |
|
|
3 |
105 |
AT GTAAGT |
CGCAG AC |
16 |
319 |
AG GTATGC |
TTCAG GT |
29 |
118 |
AA GTAAGT |
ACCAG GT |
|
|
4 |
102 |
AG GTTATT |
GGTAG GG |
17 |
148 |
AC GTAATT |
TTAAG GG |
30 |
99 |
AA GTAAGA |
AATAG GG |
|
|
5 |
115 |
TG GTGAGG |
GAGAG GC |
18 |
150 |
AA GTAAGT |
TGCAG TT |
31 |
276 |
AG GTAATT |
TATAG GC |
|
|
6 |
356 |
AG GTACGT |
TGCAG AC |
19 |
87 |
AA GTAAGC |
TCCAG TT |
32 |
90 |
TG GTAAAA |
TACAG GC |
|
|
7 |
105 |
AG GTATTG |
TGTAG GA |
20 |
193 |
AG GTATCT |
TGGAG TT |
33 |
110 |
TA GTTTCA |
GTGAG TG |
|
|
8 |
85 |
AG GTCAGT |
ATCAG GA |
21 |
125 |
AG GTAATT |
TTTAG GC |
34 |
91 |
AA GTAAGC |
TACAG TA |
|
|
9 |
84 |
AG GTATGT |
AAAG GT |
22 |
84 |
AG GTTCGG |
ATCAG GC |
35 |
93 |
TG GTAAAA |
TTCAG GT |
|
|
10 |
229 |
GC GTTAGC |
TTCAG GC |
23 |
74 |
GA GTAAGT |
TATAG TC |
36 |
94 |
CG GTATTT |
TTCAG GT |
|
|
11 |
81 |
AG GTAAAG |
CTCAG CT |
24 |
121 |
AG GTATGT |
TACAG GC |
37 |
79 |
AT GTATGT |
CATAG GT |
|
|
12 |
87 |
AG GTCCGT |
AACAG CA |
25 |
202 |
AG GTTCGT |
TTCAG AC |
38 |
81 |
AG GTAACC |
CGCAG CA |
|
|
13 |
91 |
AG GTGTCC |
TTCAG AA |
26 |
97 |
CG GTGCCT |
TTCAG AG |
|||||
|
|
||||||||||||
|
Reddy and Day Genome Biology 2001 2:research0024.1 doi:10.1186/gb-2001-2-7-research0024 |
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