A clustering method for repeat analysis in DNA sequences
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* Corresponding author: Natalia Volfovsky natalia@tigr.org
Genome Biology 2001, 2:research0027-research0027.11 doi:10.1186/gb-2001-2-8-research0027
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Cited by
BioMed Central: 5 citations
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Research article
Natalia Volfovsky, Taras K Oleksyk, Kristine C Cruz, Ann L Truelove, Robert M Stephens, Michael W Smith BMC Genomics 2009, 10:51 (26 January 2009) |
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Methodology article
Stefan Kurtz, Apurva Narechania, Joshua C Stein, Doreen Ware BMC Genomics 2008, 9:517 (31 October 2008) |
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Research article
Jean-Charles de Cambiaire, Christian Otis, Claude Lemieux, Monique Turmel BMC Evolutionary Biology 2006, 6:37 (25 April 2006) The chlorophycean green alga Scenedesmus obliquus has a more compact chloroplast genome than other green algae, displaying the lowest proportion of short repeats and clustering chloroplast genes on the same strand.
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Research article
Jean-François Pombert, Claude Lemieux, Monique Turmel BMC Biology 2006, 4:3 (3 February 2006) The newly sequenced chloroplast genome of the ulvophyte Oltamannsiellopsis is quadripartite and supports Chlorella and other Trebouxiophyceae as basal relative to the chlorophycean Chlamydomonas and the Ulvophyceae.
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Method
Identifying repeat domains in large genomes Degui Zhi, Benjamin J Raphael, Alkes L Price, Haixu Tang, Pavel A Pevzner Genome Biology 2006, 7:R7 (31 January 2006) A graph-based method for the analysis of repeat families in a repeat library is presented that helps elucidating the evolutionary history of repeats. |