Table 5 |
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|
Prototype repeat sequences (Arabidopsis thaliana genome) that matched genes or annotated AtRepBase repeats |
|||
|
Class number |
Class size |
Genes |
Repeats |
|
|
|||
|
1 |
30,975 |
Hypothetical protein |
ATR0081 minisatellite 1 from 63767 to 63826 |
|
12639 |
202 |
AC002534 ATR0058 |
|
|
56 |
164 |
Hypothetical protein |
|
|
42 |
135 |
ATR0087 |
|
|
284 |
135 |
Pseudogene |
|
|
6 |
133 |
Hypothetical protein |
|
|
20 |
111 |
Putative O-methyltransferase 1 |
|
|
54 |
111 |
Putative reverse transcriptase |
|
|
62 |
107 |
Hypothetical protein |
|
|
95 |
85 |
Hypothetical protein |
|
|
1389 |
85 |
Putative receptor kinase |
|
|
269 |
81 |
Putative receptor kinase |
|
|
58 |
78 |
Putative retroelement pol polyprotein |
|
|
236 |
71 |
Putative disease resistance protein |
|
|
18068 |
67 |
Putative Ser/Thr kinase |
|
|
5 |
64 |
Pseudogene |
|
|
29 |
64 |
Hypothetical protein |
|
|
400 |
57 |
Hypothetical protein |
|
|
12310 |
56 |
Hypothetical protein |
U65470 ATR0043 |
|
187 |
55 |
Hypothetical protein |
|
|
38 |
50 |
Putative NBS/LRR disease resistance protein |
|
|
47 |
48 |
Putative phenylalanine ammonia-lyase |
|
|
104 |
46 |
M65137 ATR0025 |
|
|
345 |
45 |
Pseudogene |
|
|
12594 |
45 |
Putative reverse transcriptase |
|
|
735 |
45 |
Hypothetical protein |
|
|
240 |
43 |
Putative disease-resistance protein |
|
|
167 |
42 |
Pseudogene |
|
|
60 |
41 |
Hypothetical protein |
|
|
211 |
41 |
||
|
81 |
39 |
Hypothetical protein |
|
|
124 |
38 |
Hypothetical protein |
|
|
411 |
38 |
Putative disease-resistance protein |
|
|
324 |
37 |
X93607 ATR0046 |
|
|
170 |
37 |
ATR0084 repeat 5 from 102144 to 105991 |
|
|
421 |
37 |
AF024504 ATR0056 |
|
|
293 |
36 |
Hypothetical protein |
repeat01 ATR0090 |
|
357 |
35 |
Pseudogene |
|
|
426 |
34 |
CHP-rich zinc finger protein-like |
|
|
22466 |
32 |
Hypothetical protein |
|
|
64 |
32 |
Hypothetical protein |
|
|
242 |
32 |
Hypothetical protein |
|
|
249 |
31 |
Putative cytochrome P450 |
|
|
18597 |
31 |
Putative transposon protein |
|
|
256 |
31 |
Putative serine carboxypeptidase |
|
|
202 |
30 |
Hypothetical protein |
|
|
290 |
30 |
Pseudogene |
|
|
18166 |
29 |
Putative CHP-rich zinc finger protein |
|
|
12400 |
29 |
Hypothetical protein |
|
|
297 |
29 |
Mutator-like transposase |
ATR0089 |
|
|
|||
|
Volfovsky et al. Genome Biology 2001 2:research0027.1 doi:10.1186/gb-2001-2-8-research0027 |
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