Table 1 |
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A sample listing from TAED indicating candidate adaptively evolving genes detected that emanated from the Bovidae node |
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Genes with KA/KS >1.0 |
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1. |
T-cell receptor CD3 epsilon chain from Master Catalog family 9668 |
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2. |
AF092740 cytotoxic T-lymphocyte-associated protein 4 precursor |
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from Master Catalog family 9698 |
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3. |
CD5 from Master Catalog family 9700 |
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4. |
AF110984 intercellular adhesion molecule-1 precursor from Master |
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Catalog family 9802 |
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5. |
Interferon alpha/beta receptor-2 from Master Catalog family 9817 |
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6. |
AF020508 pregnancy-associated glycoprotein 6 from Master Catalog |
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family 15612 |
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7. |
MCH OVAR-DQ-ALPHA1 from Master Catalog family 15669 |
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8. |
Major histocompatibility complex class II from Master Catalog family |
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21739 |
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9. |
T-cell receptor gamma from Master Catalog family 21940 |
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Additional genes with KA/KS >0.6 |
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10. |
Interleukin 2 receptor from Master Catalog family 9745 |
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11. |
Interleukin-3 from Master Catalog family 9775 |
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12. |
AF019622 myostatin; growth/differentiation factor-8; GDF-8 from |
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Master Catalog family 20325 |
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13. |
Fas gene product from Master Catalog family 21743 |
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14. |
Calpastatin from Master Catalog family 21751 |
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15. |
Prolactin receptor from Master Catalog family 21853 |
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16. |
Pre-pro serum albumin from Master Catalog family 21864 |
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17. |
Immunoglobulin gamma-1 chain from Master Catalog family 21881 |
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18. |
AF110984 intercellular adhesion molecule-1 precursor from Master |
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Catalog family 21997 |
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These examples potentially include orthologs between different species of Bovidae, paralogs, alternatively spliced cDNAs with potentially different functional effects and intraspecific modifications. |
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Liberles et al. Genome Biology 2001 2:research0028.1 doi:10.1186/gb-2001-2-8-research0028 |
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