Table 1 |
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|
A sample of annotated E. coli K-12 genes |
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| Bnum |
Magnum |
Gene |
Gene product type* |
Gene product† |
|
|
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| b0038 |
ec_0059 |
caiB |
e |
l-carnitine dehydratase, NAD(P)-binding |
| b0039 |
ec_0061 |
caiA |
pe |
Putative acyl-CoA dehydrogenase |
| b0019 |
ec_0026 |
nhaA |
t |
Na+/H+ antiporter, NhaA family |
| b0040 |
ec_0062 |
caiT |
pt |
Putative betaine/carnitine/choline transport protein, BCCT family |
| b0064 |
ec_0098 |
araC |
r |
Transcriptional regulator of arabinose catabolism, AraC/XylS family |
| b0076 |
ec_0116 |
leuO |
pr |
Putative transcriptional regulator of leucine biosynthesis, LysR family |
| b0814 |
ec_1234 |
ompX |
m |
Outer membrane protease, receptor for phage OX2 |
| b0117 |
ec_0171 |
yacH |
pm |
Putative membrane protein |
| b0170 |
ec_0246 |
tsf |
f |
Protein chain elongation factor EF-Ts |
| b0236 |
ec_0334 |
prfH |
pf |
Putative peptide chain release factor |
| b0023 |
ec_0031 |
rpsT |
s |
30S ribosomal subunit protein S20 |
| b0138 |
ec_0200 |
yadM |
ps |
Putative fimbrial-like protein |
| b0684 |
ec_1032 |
fldA |
c |
Flavodoxin 1 |
| b1697 |
ec_2618 |
ydiQ |
pc |
Putative electron transfer flavoprotein |
| b0251 |
ec_0359 |
yafY |
h |
CP4-6 prophage |
| b0054 |
ec_0083 |
imp |
ph |
Organic solvent tolerance |
| b0201 |
rrsH |
n |
16S rRNA |
|
| b0001 |
ec_G0001 |
thrL |
l |
thr operon leader peptide |
| b0050 |
ec_0078 |
apaG |
o |
Conserved protein |
| b0081 |
ec_0123 |
mraZ |
o |
Conserved hypothetical protein |
| b0005 |
ec_G0005 |
yaaX |
o |
Unknown CDS |
|
|
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|
*Gene product type: c, carrier; e, enzyme; f, factor; h, extrachromosomal origin; l, leader peptide; m, membrane component; n, RNA; o, ORF of unknown function; pc, putative carrier; pe, putative enzyme; pf, putative factor; ph, phenotype; pm, putative membrane component; pr, putative regulator; ps, putative structure; pt, putative transporter; r, regulator; s, structure; t, transporter. †Gene products consisting of one identified module. |
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|
Serres et al. Genome Biology 2001 2:research0035.1 doi:10.1186/gb-2001-2-9-research0035 |
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