Table 1 |
||||||
|
Dissimilarity (D) comparison results from 50 validation sequences |
||||||
| Accession |
Gene name |
mRNA (?) |
Length (nucleotides) |
D(A) plants |
D(B1) oomycetes |
D(B3) bacteria |
|
|
||||||
| Glomus versiforme |
||||||
| AJ009628 |
chitin synthase Gvchs1 |
n |
638 |
2,535.2 |
2,468.6 |
2,718.4 |
| AJ009629 |
chitin synthase Gvchs2 |
n |
481 |
2,203.2 |
2,050.0 |
2,286.0 |
| AJ009630 |
chitin synthase Gvchs3 |
n |
4,116 |
7,205.9 |
5,235.8 |
5,985.8 |
| U38650 |
phosphate transporter |
y |
1,833 |
3,937.9 |
5,702.3 |
6,514.3 |
| Glycine max |
||||||
| J01297 |
actin SAc3 |
n |
1,620 |
3,322.0 |
4,554.6 |
5,329.7 |
| K00821 |
lectin Le1 |
n |
2,152 |
4,124.6 |
6,558.3 |
7,928.3 |
| M64267 |
iron superoxide dismutase |
y |
1,056 |
2,773.6 |
3,761.2 |
4,269.2 |
| Medicago truncatula |
||||||
| AF000354 |
phosphate transporter MtPT1 |
y |
1,920 |
3,800.3 |
5,630.7 |
6,654.2 |
| AF000355 |
phosphate transporter MtPT2 |
y |
1,867 |
3,673.9 |
5,390.1 |
6,424.0 |
| AF055921 |
Mt4 genomic sequence |
n |
954 |
2,631.9 |
4,004.4 |
4,539.1 |
| AF106929 |
cell wall protein AM1 |
y |
885 |
3,433.6 |
4,200.0 |
4,774.3 |
| AF106930 |
translation initiation protein AM3-1 |
y |
3,154 |
4,557.6 |
5,982.7 |
7,212.8 |
| AF106931 |
translation initiation protein AM3-2 |
y |
1,384 |
3,371.1 |
4,130.0 |
4,644.4 |
| AJ132891 |
ha1 gene, exons 1–22 |
n |
3,620 |
4,383.2 |
8,683.6 |
10,730.7 |
| AJ388847 |
MtNo213 superoxide dismutase |
y |
530 |
2,110.2 |
2,219.8 |
2,367.0 |
| AJ388865 |
MtNo233 triosephosphate isomerase |
y |
563 |
2,171.6 |
2,405.6 |
2,618.6 |
| U16727 |
peroxidase precursor rip1 |
n |
2,603 |
4,246.1 |
8,210.0 |
9,901.9 |
| U38651 |
sugar transporter |
y |
1,728 |
3,619.6 |
5,128.4 |
5,976.5 |
| X57732 |
leghemoglobin Mtlb1 |
n |
1,073 |
3,021.3 |
5,029.1 |
5,845.9 |
| X57733 |
leghemoglobin Mtlb2 |
n |
592 |
2,045.9 |
3,156.0 |
3,568.2 |
| X60386 |
lectin lec1 |
n |
1,363 |
3,228.8 |
4,935.4 |
5,605.6 |
| X60387 |
lectin lec2 |
n |
1,192 |
3,142.8 |
4,472.6 |
4,985.9 |
| X82216 |
lec3 |
n |
1,155 |
2,928.4 |
4,283.3 |
4,930.8 |
| X68032 |
ENOD12 |
n |
772 |
2,780.4 |
3,679.7 |
4,096.5 |
| X99466 |
ENOD16 |
n |
1,142 |
3,124.6 |
4,535.5 |
5,156.2 |
| X99467 |
ENOD20 |
n |
1,405 |
4,003.6 |
5,294.7 |
5,966.7 |
| Y10267 |
glutamine synthetase |
y |
1,413 |
3,116.1 |
4,506.5 |
5,292.1 |
| Y10373 |
chitinase |
y |
1,305 |
3,369.5 |
4,090.4 |
4,703.4 |
| Phytophthora infestans |
||||||
| AF004951 |
surface glycoprotein elicitor inf2A |
y |
648 |
3,428.4 |
2,421.9 |
2,589.1 |
| AF004952 |
surface glycoprotein elicitor inf2B |
y |
701 |
3,611.7 |
2,514.5 |
2,698.6 |
| L23938 |
ipiO2 |
n |
1,556 |
4,125.2 |
4,339.5 |
4,855.5 |
| L23939 |
ipiO1 |
n |
1,826 |
4,360.5 |
4,580.9 |
5,259.0 |
| L24206 |
ipiB1 |
n |
1,726 |
6,086.7 |
4,584.3 |
5,159.3 |
| M59715 |
actin actA |
n |
1,736 |
5,137.1 |
3,637.2 |
4,420.0 |
| M59716 |
actin actB |
n |
1,405 |
4,425.3 |
3,569.5 |
4,141.6 |
| M83535 |
calmodulin calA |
n |
1,358 |
4,063.0 |
3,724.9 |
4,138.1 |
| X64537 |
tigA |
n |
2,448 |
6,221.0 |
4,193.8 |
5,181.9 |
| P. capsici |
||||||
| U42304 |
chitin synthase chs |
n |
449 |
2,238.8 |
1,882.7 |
1,997.5 |
| P. parasitica |
||||||
| X97205 |
cellulose-binding-elicitor lectin |
y |
918 |
3,819.1 |
2,876.0 |
3,208.4 |
| Sinorhizobium meliloti |
||||||
| AF040724 |
nodD |
n |
1,776 |
5,317.9 |
4,197.8 |
4,179.4 |
| AF110770 |
superoxide dismutase sodA |
n |
1,196 |
4,898.2 |
3,343.2 |
2,916.0 |
| M61753 |
exoD |
n |
858 |
4,071.8 |
2,847.2 |
2,372.9 |
| M68858 |
nodulation proteins nodP and nodQ |
n |
3,476 |
9,992.3 |
5,288.0 |
3,954.7 |
| M96261 |
phosphate regulators phoU and phoB |
n |
1,178 |
5,332.7 |
3,359.3 |
2,866.4 |
| U90221 |
syrA |
n |
1,102 |
4,176.2 |
3,375.8 |
3,220.8 |
| X01649 |
nodA, nodB, and nodC |
n |
3,373 |
7,684.1 |
4,819.5 |
4,646.1 |
| X03065 |
regulatory nitrogen fixation fixD |
n |
2,111 |
5,723.0 |
4,249.8 |
4,228.3 |
| X17523 |
glutamine synthetase II |
n |
990 |
4,303.5 |
2,959.9 |
2,720.4 |
| Y08500 |
putA |
n |
3,804 |
13,623.3 |
6,376.5 |
4,212.0 |
| Agrobacterium tumefaciens |
||||||
| U91632 |
sugar transporter gguA and membrane-spanning permeases gguB and gguC |
n |
4,185 |
11,132.6 |
5,959.4 |
4,551.4 |
| sugar transporter gguA and membrane-spanning permeases gguB and gguC |
||||||
|
|
||||||
|
Incorrect inferences are underlined. |
||||||
|
Hraber and Weller Genome Biology 2001 2:research0037.1 doi:10.1186/gb-2001-2-9-research0037 |
||||||
