Research
On the species of origin: diagnosing the source of symbiotic transcripts
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* Corresponding author: Peter T Hraber pth@santafe.edu
1 Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA
2 Virginia Bioinformatics Institute, 1750 Kraft Drive, Suite 400, Blacksburg, VA 24061, USA
Genome Biology 2001, 2:research0037-research0037.14 doi:10.1186/gb-2001-2-9-research0037
Published: 23 August 2001Additional files
countGC.pl:
PERL script used to compute GC content of sequences analyzed.
Format: PL Size: 1KB Download file
hyb2dis.txt:
Patch file that converts White's hybridize program to compute individual dissimilarity values.
Format: TXT Size: 2KB Download file
Training sets:
FASTA-formatted text files that contain the sequences used for calibration and comparison.
Format: TXT Size: 1.8MB Format: TXT Size: 2.8MB Format: TXT Size: 1.5MB Format: TXT Size: 471KB Download file
Test sets:
FASTA-formatted text files containing transcripts analyzed, edited for quality.
Format: TXT Size: 663KB Format: TXT Size: 583KB Format: TXT Size: 650KB Format: TXT Size: 631KB Format: TXT Size: 1.5MB Format: TXT Size: 119KB Format: TXT Size: 1.1MB Format: TXT Size: 1.4MB Download file
Test results:
Text files that contain transcript analysis results, sorted from least to most plant-like.
Format: DAT Size: 43KB Format: DAT Size: 41KB Format: DAT Size: 44KB Format: DAT Size: 42KB Format: DAT Size: 42KB Format: DAT Size: 107KB Format: DAT Size: 141KB Format: DAT Size: 117KB Format: DAT Size: 81KB Format: DAT Size: 102KB Download file