Table 3

Test sets

Species

Tissue

Library (ID)

Raw

Trimmed

Screened

n

nt

n

nt

n

nt

P. sojae

Mycelia

MY

969

527,295

902

510,010

895

506,086

P. sojae

Zoospores

ZO

1,013

583,520

960

569,576

957

567,976

+ G. max

2 dpi

HA

994

577,626

938

563,226

927

556,305

M. truncatula

Root hairs

MtRHE

899

539,719

893

536,787

890

534,037

+ G. versiforme

10–38 dpi

MHAM

3,259

1,785,721

3,030

1,735,390

3,017

1,725,491

+ P. medicaginis

10 dpi

DSIR

2,462

1,324,815

2,289

1,287,568

2,284

1,282,518

M. truncatula

Roots

KV0

2,718

1,387,832

2,550

1,351,137

2,492

1,318,131

+ S. meliloti

1 dpi

KV1

1,125

562,452

1,012

537,644

1,003

531,813

+ S. meliloti

2 dpi

KV2

1,960

976,344

1,732

926,953

1,726

922,433

+ S. meliloti

3 dpi

KV3

2,375

1,316,430

2,217

1,279,691

2,173

1,251,795

Number of EST sequences (n) and nucleotides (nt) as raw, trimmed (limited lengths of N-rich regions, poly(A) and poly(T) sites), and screened (removed ribosomal, chloroplast, and mitochondrial DNA, and remaining sequences shorter than 300 nt) sequences. Transcripts were isolated from the cDNA library indicated by the ID column. dpi, days post-inoculation, indicating mixed plant-microbe cultures.

Hraber and Weller Genome Biology 2001 2:research0037.1   doi:10.1186/gb-2001-2-9-research0037