Table 1 |
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|
Key to sequence identifiers |
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| NCBI GI number |
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|
|
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| Species name |
Acronym |
trpEb-1 |
trpEb-2 |
|
|
|||
| Actinobacillus actinomycetemcomitans |
Aac |
N/A |
|
| Aeropyrum pernix |
Ape-1 |
7674393 |
|
| Aeropyrum pernix |
Ape-2 |
7674395 |
|
| Anabaena sp. |
Asp-1 |
N/A |
|
| Anabaena sp. |
Asp-2 |
N/A |
|
| Aquifex aeolicus |
Aae-1 |
6226273 |
|
| Aquifex aeolicus |
Aae-2 |
7674374 |
|
| Arabidopsis thaliana |
Ath-1 |
136251 |
|
| Arabidopsis thaliana |
Ath-2 |
1174779 |
|
| Arabidopsis thaliana |
Ath-3 |
10176821 |
|
| Archaeoglobus fulgidus |
Afu-1 |
3334387 |
|
| Archaeoglobus fulgidus |
Afu-2 |
7674372 |
|
| Bacillus halodurans |
Bha |
10174280 |
|
| Bacillus stearothermophilus |
Bst |
226585 |
|
| Bacillus subtilis |
Bsu |
136270 |
|
| Bordetella pertussis |
Bpe |
N/A |
|
| Buchnera sp. APS |
Bsp |
11182450 |
|
| Campylobacter jejuni |
Cje |
11269304 |
|
| Caulobacter crescentus |
Ccr |
136272 |
|
| Chlamydia trachomatis |
Ctr |
6226274 |
|
| Chlamydia psittaci |
Cps-1 |
N/A |
|
| Chlamydia psittaci |
Cps-2 |
N/A |
|
| Chlorobium tepidum |
Cte-1 |
N/A |
|
| Chlorobium tepidum |
Cte-2 |
N/A |
|
| Clostridium acetobutylicum |
Cac |
N/A |
|
| Corynebacterium diphtheriae |
Cdip-1 |
N/A |
|
| Corynebacterium diphtheriae |
Cdip-2 |
N/A |
|
| Dehalococcoides ethenogenes |
Det |
N/A |
|
| Deinococcus radiodurans |
Dra |
7474051 |
|
| Escherichia coli |
Eco |
136273 |
|
| Ferroplasma acidarmanus |
Fac |
N/A |
|
| Geobacter sulfurreducens |
Gsu-1 |
N/A |
|
| Geobacter sulfurreducens |
Gsu-2 |
N/A |
|
| Haemophilus influenzae |
Hin |
1174785 |
|
| Halobacterium sp. |
Hal |
14423973 |
|
| Helicobacter pylori |
Hpy |
7674399 |
|
| Klebsiella pneumoniae |
Kpn |
N/A |
|
| Lactococcus lactis |
Lla |
267168 |
|
| Legionella pneumophila |
Lpn |
N/A |
|
| Mesorhizobium loti |
Mlo |
13474230 |
|
| Methanobacterium thermoautotrophicum |
Mth-1 |
3334383 |
|
| Methanobacterium thermoautotrophicum |
Mth-2 |
7674371 |
|
| Methanococcus jannaschii |
Mja |
2501412 |
|
| Methanosarcina barkeri |
Mba-1 |
N/A |
|
| Methanosarcina barkeri |
Mba-2 |
N/A |
|
| Methanosarcina barkeri |
Mba-3 |
N/A |
|
| Mycobacterium bovis |
Mbo |
N/A |
|
| Mycobacterium leprae |
Mle |
13093205 |
|
| Mycobacterium smegmatis |
Msm-1 |
N/A |
|
| Mycobacterium smegmatis |
Msm-2 |
N/A |
|
| Mycobacterium tuberculosis |
Mtu |
3024761 |
|
| Neisseria gonorrhoeae |
Ngo |
N/A |
|
| Neisseria meningitides |
Nme |
11269306 |
|
| Nitrosomonas europaea |
Neu |
N/A |
|
| Nostoc punctiforme |
Npu-1 |
N/A |
|
| Nostoc punctiforme |
Npu-2 |
N/A |
|
| Pasteurella multocida |
Pmu |
13432266 |
|
| Prochlorococcus marinus |
Pma |
N/A |
|
| Pseudomonas aeruginosa |
Paeru |
12230946 |
|
| Pyrobaculum aerophilum |
Paero-1 |
N/A |
|
| Pyrobaculum aerophilum |
Paero-2 |
N/A |
|
| Pyrococcus abyssi |
Pab-1 |
14520675 |
|
| Pyrococcus abyssi |
Pab-2 |
14423981 |
|
| Pyrococcus furiosus |
Pfu-1 |
N/A |
|
| Pyrococcus furiosus |
Pfu-2 |
N/A |
|
| Pyrococcus horikoshii |
Pho |
14591361 |
|
| Rhodobacter capsulatus |
Rca-1 |
N/A |
|
| Rhodobacter capsulatus |
Rca-2 |
N/A |
|
| Rhodopseudomonas palustris |
Rpa-1 |
N/A |
|
| Rhodopseudomonas palustris |
Rpa-2 |
N/A |
|
| Salmonella typhimurium |
Sty |
136281 |
|
| Staphylococcus aureus |
Sau |
13701169 |
|
| Streptococcus mutans |
Smu |
N/A |
|
| Streptococcus pneumoniae |
Spn |
N/A |
|
| Streptomyces coelicolor |
Sco |
6226276 |
|
| Sulfolobus solfataricus |
Sso-1 |
14424473 |
|
| Sulfolobus solfataricus |
Sso-2 |
13814334 |
|
| Synechococcus sp. |
Syn |
N/A |
|
| Synechocystis sp. |
Ssp |
2501413 |
|
| Thermomonospora fusca |
Tfu |
N/A |
|
| Thermoplasma acidophilum |
Tac |
13878841 |
|
| Thermoplasma volcanium |
Tvo |
13541762 |
|
| Thermotoga maritima |
Tma-1 |
1717761 |
|
| Thermotoga maritima |
Tma-2 |
7674388 |
|
| Vibrio cholerae |
Vch |
11269279 |
|
| Xylella fastidiosa |
Xfa |
11269281 |
|
| Yersinia pestis |
Ype |
N/A |
|
| Yersinia pseudotuberculosis |
Yps |
N/A |
|
| Zea mays |
Zma-1 |
1174780 |
|
| Zea mays |
Zma-2 |
1174778 |
|
|
|
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|
Xie et al. Genome Biology 2001 3:research0004.1 doi:10.1186/gb-2001-3-1-research0004 |
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