Figure 2.

An example of an InterPro entry [49,50]. This is entry IPR000402, which describes the Na+, K+ ATPase β subunit. The entry integrates two PROSITE patterns and a Pfam HMM, which are diagnostic for the same family. It includes an abstract describing this family, and match lists of all SWISS-PROT and TrEMBL proteins that belong to the family. (b) The output from the sequence search result of InterProScan. The Escherichia coli flagellar biosynthetic protein FliP was scanned, and shown to hit InterPro entry IPR002039, which describes the FliP protein family. The results are shown in both a graphical and a tabular view, and include amino-acid positions for the signature matches.

Mulder and Apweiler Genome Biology 2001 3:reviews2001.1-reviews2001.8   doi:10.1186/gb-2001-3-1-reviews2001