Table 2 |
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List of genes used to illustrate the technique and their abbreviations |
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Abbreviation |
Gene name |
|
|
|
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ABCB2 |
ATP-binding cassette, subfamily B (MDR/TAP), member 2 |
|
AK3 |
Adenylate kinase 3 |
|
B2M |
Beta-2-microglobulin |
|
BIRC3 |
Baculoviral IAP repeat-containing 3 |
|
CFLAR |
CASP8 and FADD-like apoptosis regulator |
|
DUSP1 |
Dual specificity phosphatase 1 |
|
DUSP4 |
Dual specificity phosphatase 4 |
|
DUSP5 |
Dual specificity phosphatase 5 |
|
G1P3 |
Interferon, alpha-inducible protein (clone IFI-6-16) |
|
GADD45A |
Growth arrest and DNA-damage-inducible, alpha |
|
GADD45B |
Growth arrest and DNA-damage-inducible, beta |
|
GBP1 |
Guanylate binding protein 1, interferon-inducible, 67kD |
|
GCH1 |
GTP cyclohydrolase 1 |
|
H2AFO |
H2A histone family, member O |
|
HLA-F |
Major histocompatibility complex, class I, F |
|
IFIT |
Interferon-induced protein with tetratricopeptide repeats |
|
IFITM |
Interferon induced transmembrane protein |
|
IL15R |
Interleukin 15 receptor |
|
IL7R |
Interleukin 7 receptor |
|
IP10 |
Interferon induced protein 10 |
|
IP9 |
Interferon induced protein 9 |
|
IRF4 |
Interferon regulatory factor 4 |
|
IRF7 |
Interferon regulatory factor 7 |
|
ISG15 |
Interferon-stimulated protein, 15 kDa |
|
ISG20 |
Interferon stimulated gene (20kD) |
|
MCP2 |
Monocyte chemotactic protein 2 |
|
MCP3 |
Monocyte chemotactic protein 3 |
|
MIG |
Monokine induced by gamma interferon |
|
MIP3A |
Macrophage inflammatory protein 3 alpha |
|
MMP9 |
Matrix metalloproteinase 9 |
|
MT1A |
Metallothionein 1A (functional) |
|
MX1 |
Myxovirus (influenza) resistance 1 |
|
MX2 |
Myxovirus (influenza) resistance 2 |
|
NFKB1 |
Nuclear factor kappaB 1 (p105) |
|
NFKB2 |
Nuclear factor kappaB2 (p49/p100) |
|
NFKBIA |
Nuclear factor kappaB inhibitor, alpha |
|
NR4A3 |
Nuclear receptor subfamily 4, group A, member 3 (NOR1) |
|
NRP2 |
Neuropilin 2 |
|
OAS |
2'-5'-oligoadenylate synthetase |
|
PDE4B |
Phosphodiesterase 4B, cAMP-specific |
|
PSMA |
Proteasome (prosome, macropain) subunit, alpha |
|
PSME |
Proteasome activator subunit 2 (PA28) |
|
PTP1B |
Protein tyrosine phosphatase 1B |
|
RANTES |
RANTES |
|
SOD2 |
Superoxide dismutase 2, mitochondrial |
|
STAT1 |
Signal transducer and activator of transcription 1, 91kD |
|
STAT4 |
Signal transducer and activator of transcription 4 |
|
TNFAIP3 |
Tumor necrosis factor, alpha-induced protein 3 |
|
TNFAIP6 |
Tumor necrosis factor, alpha-induced protein 6 |
|
TRAF1 |
TNF receptor-associated factor 1 |
|
VEGF |
Vascular endothelial growth factor |
|
|
|
|
The genes for which a sufficient number of abstracts could be retrieved are listed. For the complete list of co-induced genes and ESTs included in the analysis, see Additional data files. |
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|
Chaussabel and Sher Genome Biology 2002 3:research0055.1 doi:10.1186/gb-2002-3-10-research0055 |
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