Table 4 |
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|
Summary of various domains present in Arabidopsis EF-hand-containing proteins and their InterPro accession numbers |
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|
Domain* |
Accession number |
Protein type |
|
|
||
|
ATP_GTP_A |
IPR001687 |
Binding site motif |
|
Calflagin |
IPR003299 |
Calcium-binding |
|
Recoverin |
IPR002048 |
Calcium-binding |
|
S-100/ICaBP type CBP |
IPR001751 |
Calcium-binding |
|
Adptrnslcase |
IPR000213 |
Carrier |
|
Cation (ca, na) pore region |
IPR001682 |
Carrier |
|
Graves disease |
IPR002167 |
Carrier |
|
Mitoch_carrier |
IPR002067 |
Carrier |
|
Potassium channel |
IPR001622 |
Carrier |
|
PTM |
IPR003880 |
Carrier |
|
bHLH |
IPR001092 |
Dimerization |
|
BTB/POZ domain |
IPR000210 |
Dimerization |
|
Biotin operon repressor |
IPR004209 |
DNA interaction |
|
DDT domain |
IPR004022 |
DNA binding |
|
HLH_Myc |
IPR003015 |
DNA binding |
|
Myb DNA binding domain |
IPR001005 |
DNA binding |
|
Elongation factor aEF-2 |
IPR004543 |
Elongation factor |
|
EFG_C |
IPR000640 |
Elongation factor |
|
GTP_EFTU(_D2) |
IPR004161 |
Elongation factor |
|
pfkB |
IPR002173 |
Enzyme |
|
Aminoacyl-transfer RNA syn class II |
IPR002106 |
Enzyme |
|
AMP-dependent synthetase and ligase |
IPR000873 |
Enzyme |
|
ATP synthase alpha and beta subunit |
IPR000194 |
Enzyme |
|
Cytb-245 hc |
IPR000778 |
Enzyme |
|
Cytochrome P450 enzyme |
IPR001128 |
Enzyme |
|
Euk protein kinase |
IPR000719 |
Enzyme |
|
FAD_pyr_redox |
IPR001237 |
Enzyme |
|
Ferric_reduct |
IPR002916 |
Enzyme |
|
GatC |
IPR004415 |
Enzyme |
|
GLFV_dehydrog |
IPR001625 |
Enzyme |
|
PIP5K |
IPR002498 |
Enzyme |
|
PIPLC |
IPR001992 |
Enzyme |
|
Plant peroxidase |
IPR000823 |
Enzyme |
|
Protein phosphatase 2C subfamily |
IPR000222 |
Enzyme |
|
PS_Darbxylase, Porpobil_deam |
IPR003817 |
Enzyme |
|
Pyr_redox |
IPR001237 |
Enzyme |
|
Small GTPase |
IPR001806 |
Enzyme |
|
ThiF_family |
IPR000594 |
Enzyme |
|
UBACT |
IPR000127 |
Enzyme |
|
Jacalin-related lectin domain |
IPR001229 |
Lectin |
|
Dynamin family |
IPR001401 |
Microtubule associated |
|
NAD-binding site |
IPR000205 |
NAD binding |
|
No apical meristem protein |
IPR003441 |
Plant development |
|
Domain* |
Accession |
Protein type |
|
Serpin |
IPR000215 |
Protease inhibitor |
|
14-3-3 |
IPR000308 |
Protein interaction |
|
Calponin homology |
IPR001715 |
Protein interaction |
|
EPS15 repeat |
IPR000261 |
Protein interaction |
|
F-box domain |
IPR001810 |
Protein interaction |
|
SET-domain of transcriptional regulators |
IPR001214 |
Protein interaction |
|
Ubiquitin-associated domain |
IPR003903 |
Protein interaction |
|
Zn-finger-ZZ type |
IPR000433 |
Protein interaction |
|
Zn-finger-FYVE |
IPR000306 |
Protein interaction |
|
Zn-finger-Ra-binding |
IPR001876 |
Protein interaction |
|
PPR repeats |
IPR000285 |
Repeat |
|
TPR |
IPR001440 |
Repeat |
|
Josephin, UIM |
IPR002950 |
Repeat |
|
Kelch repeat |
IPR001798 |
Repeat |
|
ATHILA |
IPR004312 |
Retrotransposon |
|
NPH3 |
IPR004249 |
Signal transduction |
|
ER_TARGET |
IPR000886 |
Targeting |
|
NLS_BP |
IPR001472 |
Targeting |
|
PHD-finger |
IPR001965 |
Transcription |
|
eIF4-gamma/eIF |
IPR003307 |
Translation |
|
PTS_HPR_SER |
IPR002114 |
Transport |
|
Nucleoside_tran |
IPR002259 |
Transport |
|
En/Spm-like transposon proteins |
IPR004242 |
Transposon |
|
|
||
|
*See Table 1 for explanation of domain abbreviations. |
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|
Day et al. Genome Biology 2002 3:research0056.1 doi:10.1186/gb-2002-3-10-research0056 |
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