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List of previously unknown genes that can be annotated using GPPP |
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| E. coli gene name (Genbank id) |
Previous annotation |
Predicted function by GPPP |
Additional evidences from BLAST/Pfam/COG |
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| b1681 (1787971) |
Hypothetical protein |
Transport system, membrane protein |
COG0719: predicted membrane components of ABC-transporter SufB |
| b1683 (1787973) |
Hypothetical protein |
Transport system, membrane protein |
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| b2608 (1788960) |
Hypothetical protein |
RNA processing |
Pfam domain: RimM. RimM is essential for processing of 16S rRNA. |
| b2766 (1789125) |
Hypothetical protein |
Flavorprotein, electron transport |
COG0644:dehydrogenase/flavoprotein |
| b0407 (1786608) |
Hypothetical protein |
Protein secretion |
Pfam domain: DUF219, (uncharacterized secreted protein) |
| b1395 (1787661) |
Putative enzyme |
Part of fad operon |
BLAST: 3-hydroxyacyl-CoA dehydrogenase |
| b2341 (1788682) |
Putative enzyme |
Part of fad operon |
BLAST: 3-hydroxyacyl-CoA dehydrogenase; enoyl-CoA isomerase/hydrotase |
| b0284 (1786478) |
Hypothetical protein |
Neighboring with xanthine dehydrogenase gene (b0286) |
BLAST: Putative oxidoreductase |
| b2866 (1789230) |
Hypothetical protein |
Neighboring with xanthine dehydrogenase (b2868) |
BLAST: Probable aldehyde oxidase and xanthine dehydrogenase family protein |
| b1674 (1787963) |
Hypothetical protein |
Oxidoreductase |
BLAST: Aldehyde ferredoxin oxidoreductase |
| b2371 (1788714) |
Hypothetical protein |
Enzyme in carnitine metabolism |
Pfam domain: CAIB-BAIF, domain involved in carnite metabolism |
| b2374 (1788717) |
Hypothetical protein |
Enzyme in carnitine metabolism |
Pfam domain: CAIB-BAIF, domain involved in carnite metabolism |
| b2125 (2367130) |
Hypothetical protein |
Response regulator in 2-component system |
Pfam domains: response-reg, REC probable cheY receiver domain |
| b0936 (1787167) |
Hypothetical protein |
Transport system |
Pfam domain: PBPb, transport system related |
| b2075 (1788390) |
Hypothetical protein |
Integral transmembrane protein |
Pfam: ACR_tran, SecD_SecF, Patched, transmembrane domain related |
| b2076 (1788391) |
Hypothetical protein |
Integral transmembrane protein |
Pfam: ACR_tran |
| b1086 (1787327) |
Hypothetical protein |
RNA processing |
BLAST: RNA pseudouridylate synthase |
Zheng et al. Genome Biology 2002 3:research0060.1 doi:10.1186/gb-2002-3-11-research0060 |
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