Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
-
* Corresponding author: Michael B Eisen mbeisen@lbl.gov
Genome Biology 2002, 3:research0059-research0059.22 doi:10.1186/gb-2002-3-11-research0059
Accesses
- Last 30 days: 87 accesses
- Last 365 days: 1102 accesses
- All time: 14395 accesses
Cited by
BioMed Central: 25 citations
|
Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering Dwight Kuo, Kai Tan, Guy Zinman, Timothy Ravasi, Ziv Bar-Joseph, Trey Ideker Genome Biology 2010, 11:R77 (23 July 2010) Three yeast species respond to azole drugs in different ways and show different sensitivities to fluconazole
|
|
Identifying promoter features of co-regulated genes with similar network motifs Oscar Harari, Coral del Val, Rocío Romero-Zaliz, Dongwoo Shin, Henry Huang, Eduardo A Groisman, Igor Zwir BMC Bioinformatics 2009, 10(Suppl 4):S1 (29 April 2009) |
|
Dongxiao Zhu BMC Bioinformatics 2009, 10(Suppl 1):S54 (30 January 2009) |
|
Evert-Jan Blom, Sacha AFT van Hijum, Klaas J Hofstede, Remko Silvis, Jos BTM Roerdink, Oscar P Kuipers BMC Bioinformatics 2008, 9:535 (16 December 2008) |
|
Kenneth Bryan, Pádraig Cunningham BMC Genomics 2008, 9(Suppl 2):S20 (16 September 2008) |
|
Arun Rawat, Georg J Seifert, Youping Deng BMC Bioinformatics 2008, 9(Suppl 9):S7 (12 August 2008) |
|
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins Kevin Brick, Elisabetta Pizzi BMC Bioinformatics 2008, 9:236 (16 May 2008) |
|
Discovering multi–level structures in bio-molecular data through the Bernstein inequality Alberto Bertoni, Giorgio Valentini BMC Bioinformatics 2008, 9(Suppl 2):S4 (26 March 2008) |
|
Henning Redestig, Daniel Weicht, Joachim Selbig, Matthew A Hannah BMC Bioinformatics 2007, 8:454 (18 November 2007) |
|
William A McLaughlin, Ken Chen, Tingjun Hou, Wei Wang BMC Bioinformatics 2007, 8:390 (16 October 2007) |
|
Global analysis of patterns of gene expression during Drosophila embryogenesis Pavel Tomancak, Benjamin P Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E Celniker, Gerald M Rubin Genome Biology 2007, 8:R145 (23 July 2007) Embryonic expression patterns for 6,003 (44%) of the 13,659 protein-coding genes identified in the |
|
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods Curtis Huttenhower, Avi I Flamholz, Jessica N Landis, Sauhard Sahi, Chad L Myers, Kellen L Olszewski, Matthew A Hibbs, Nathan O Siemers, Olga G Troyanskaya, Hilary A Coller BMC Bioinformatics 2007, 8:250 (12 July 2007) |
|
Shisong Ma, Hans J Bohnert Genome Biology 2007, 8:R49 (4 April 2007) The integration of stress-dependent, tissue- and cell-specific expression profiles and 5'-regulatory sequence motif analysis defines a common stress transcriptome, identifies major motifs for stress response, and places stress response in the context of tissue and cell lineages in the |
|
Expression genomics in breast cancer research: microarrays at the crossroads of biology and medicine Lance D Miller, Edison T Liu Breast Cancer Research 2007, 9:206 (26 March 2007) |
|
FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data Limin Fu, Enzo Medico BMC Bioinformatics 2007, 8:3 (4 January 2007) |
|
Using local gene expression similarities to discover regulatory binding site modules Bartek Wilczyński, Torgeir R Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis BMC Bioinformatics 2006, 7:505 (17 November 2006) |
|
A classification based framework for quantitative description of large-scale microarray data Dipen P Sangurdekar, Friedrich Srienc, Arkady B Khodursky Genome Biology 2006, 7:R32 (20 April 2006) A new classification-based framework is presented that allows quantitative description of microarray data in terms of significance of co-expression within any gene group and condition-specific gene class activity. |
|
LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates Guoli Wang, Andrew V Kossenkov, Michael F Ochs BMC Bioinformatics 2006, 7:175 (28 March 2006) |
|
Determination of strongly overlapping signaling activity from microarray data Ghislain Bidaut, Karsten Suhre, Jean-Michel Claverie, Michael F Ochs BMC Bioinformatics 2006, 7:99 (28 February 2006) |
|
Biclustering of gene expression data by non-smooth non-negative matrix factorization Pedro Carmona-Saez, Roberto D Pascual-Marqui, F Tirado, Jose M Carazo, Alberto Pascual-Montano BMC Bioinformatics 2006, 7:78 (17 February 2006) |
|
Quantitative inference of dynamic regulatory pathways via microarray data Wen-Chieh Chang, Chang-Wei Li, Bor-Sen Chen BMC Bioinformatics 2005, 6:44 (7 March 2005) |
|
Alan M Moses, Derek Y Chiang, Daniel A Pollard, Venky N Iyer, Michael B Eisen Genome Biology 2004, 5:R98 (30 November 2004) MONKEY is a new method for identifying conserved transcription-factor binding sites from multiple-sequence alignments. |
|
GeneXplorer: an interactive web application for microarray data visualization and analysis Christian A Rees, Janos Demeter, John C Matese, David Botstein, Gavin Sherlock BMC Bioinformatics 2004, 5:141 (1 October 2004) |
|
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states Gaëlle Lelandais, Philippe Marc, Pierre Vincens, Claude Jacq, Stéphane Vialette BMC Bioinformatics 2004, 5:20 (3 March 2004) |
|
DNA microarray data and contextual analysis of correlation graphs Jacques Rougemont, Pascal Hingamp BMC Bioinformatics 2003, 4:15 (29 April 2003) |