Genomic functional annotation using co-evolution profiles of gene clusters
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* Corresponding author: Simon Kasif kasif@bu.edu
Genome Biology 2002, 3:research0060-research0060.9 doi:10.1186/gb-2002-3-11-research0060
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BioMed Central: 9 citations
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Technical Note
Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0 Padmanabhan Mahadevan, Donald Seto BMC Research Notes 2010, 3:41 (23 February 2010) |
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Research article
Anis Karimpour-Fard, Sonia M Leach, Lawrence E Hunter, Ryan T Gill BMC Genomics 2008, 9:313 (30 June 2008) |
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Research article
Anis Karimpour-Fard, Lawrence Hunter, Ryan T Gill BMC Genomics 2007, 8:393 (29 October 2007) |
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Method
Cross-species cluster co-conservation: a new method for generating protein interaction networks Anis Karimpour-Fard, Corrella S Detweiler, Kimberly D Erickson, Lawrence Hunter, Ryan T Gill Genome Biology 2007, 8:R185 (5 September 2007) Cluster Co-Conservation (CCC) has been extended to a method for developing protein interaction networks based on co-conservation between protein pairs across multiple species, Cross-Species Cluster Co-Conservation (CS-CCC). |
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Research article
Raja Jothi, Teresa M Przytycka, L Aravind BMC Bioinformatics 2007, 8:173 (23 May 2007) |
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Proceedings
A Regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data Zizhen Yao, Walter L Ruzzo BMC Bioinformatics 2006, 7(Suppl 1):S11 (20 March 2006) |
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Open letter
Call for an enzyme genomics initiative Peter D Karp Genome Biology 2004, 5:401 (30 July 2004) An Enzyme Genomics Initiative is proposed, the goal of which is to obtain at least one protein sequence for each enzyme that has previously been characterized biochemically. |
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Research
Galina V Glazko, Arcady R Mushegian Genome Biology 2004, 5:R32 (27 April 2004) A hierarchy of 3,688 phyletic patterns was characterized encompassing more than 5,000 known protein-coding genes from 66 complete microbial genomes. The results indicate that gene loss and displacement has occurred in the evolution of most pathways. |
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Method
Michael Strong, Parag Mallick, Matteo Pellegrini, Michael J Thompson, David Eisenberg Genome Biology 2003, 4:R59 (29 August 2003) The genome of |