Table 1

Overlap of nodes and edges between the four types of network

(a)

Nodes

Chromo

Fusion

Phylo

Combined

Chromo

41 (6)

31 (3)

100 (0)

Fusion

72 (6)

30 (3)

100 (0)

Phylo

75 (10)

41 (6)

100 (0)

Combined

80 (6)

46 (6)

34 (4)

(b)

Edges

Chromo

Fusion

Phylo

Combined

Chromo

14 (2)

11 (1)

100 (0)

Fusion

20 (4)

7 (2)

100 (0)

Phylo

14 (7)

6 (2)

100 (0)

Combined

43 (10)

30 (7)

38 (11)

Element in row i column j is the percentage of average nodes (a) or average edges (b) in network of type i that are also found in network of type j, with the standard deviation in parentheses. For example, 75% of the nodes found by phylogenetic profiling are contained in the chromo networks. This should, however, be contrasted with the finding that only 14% of the functional links in the phylo networks are in chromo networks.

Yanai and DeLisi Genome Biology 2002 3:research0064.1   doi:10.1186/gb-2002-3-11-research0064