Genome Biology

official impact factor 6.89

Open Access

Improved analytical methods for microarray-based genome-composition analysis

Charles C Kim*, Elizabeth A Joyce, Kaman Chan and Stanley Falkow

Genome Biology 2002, 3:research0065-research0065.17 doi:10.1186/gb-2002-3-11-research0065

Accesses  

  • Last 30 days: 52 accesses
  • Last year: 581 accesses
  • All time: 11320 accesses

Cited by

BioMed Central: 18 citations

Methodology article   Open Access

New methods to analyse microarray data that partially lack a reference signal

Neeltje Carpaij, Ad C Fluit, Jodi A Lindsay, Marc JM Bonten, Rob JL Willems BMC Genomics 2009, 10:522 (13 November 2009)

Research article   Open Access

Two distinct groups of porcine enteropathogenic Escherichia coli strains of serogroup O45 are revealed by comparative genomic hybridization and virulence gene microarray

Guillaume Bruant, Yongxiang Zhang, Philippe Garneau, Justin Wong, Chad Laing, John M Fairbrother, Victor PJ Gannon, Josée Harel BMC Genomics 2009, 10:402 (26 August 2009)

Research article   Open Access

Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex

Galeb S Abu-Ali, David W Lacher, Lukas M Wick, Weihong Qi, Thomas S Whittam BMC Genomics 2009, 10:296 (3 July 2009)

Research article   Open Access Highly Accessed

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)

Roy R Chaudhuri, Andrew G Allen, Paul J Owen, Gil Shalom, Karl Stone, Marcus Harrison, Timothy A Burgis, Michael Lockyer, Jorge Garcia-Lara, Simon J Foster, Stephen J Pleasance, Sarah E Peters, Duncan J Maskell, Ian G Charles BMC Genomics 2009, 10:291 (1 July 2009)

Research article   Open Access

Multiple factors interact to produce responses resembling spectrum of human disease in Campylobacter jejuni infected C57BL/6 IL-10-/- mice

Julia A Bell, Jessica L St Charles, Alice J Murphy, Vijay AK Rathinam, Anne E Plovanich-Jones, Erin L Stanley, John E Wolf, Jenna R Gettings, Thomas S Whittam, Linda S Mansfield BMC Microbiology 2009, 9:57 (18 March 2009)

Research   Open Access Highly Accessed

Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage

Jean-Marc Rolain, Patrice François, David Hernandez, Fadi Bittar, Hervé Richet, Ghislain Fournous, Yves Mattenberger, Emmanuelle Bosdure, Nathalie Stremler, Jean-Christophe Dubus, Jacques Sarles, Martine Reynaud-Gaubert, Stephanie Boniface, Jacques Schrenzel, Didier Raoult Biology Direct 2009, 4:1 (13 January 2009)

Methodology article   Open Access

Optimal control and analysis of two-color genomotyping experiments using bacterial multistrain arrays

Francisco R Pinto, Sandra I Aguiar, J Melo-Cristino, Mário Ramirez BMC Genomics 2008, 9:230 (19 May 2008)

Methodology article   Open Access

A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes

Ben Carter, Guanghui Wu, Martin J Woodward, Muna F Anjum BMC Genomics 2008, 9:53 (29 January 2008)

Research article   Open Access

Comparative genomic analysis of Tropheryma whipplei strains reveals that diversity among clinical isolates is mainly related to the WiSP proteins

My-Van La, Nicolas Crapoulet, Pascal Barbry, Didier Raoult, Patricia Renesto BMC Genomics 2007, 8:349 (2 October 2007)

Research   Open Access

Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes

Yoshitoshi Ogura, Tadasuke Ooka, Asadulghani, Jun Terajima, Jean-Philippe Nougayrède, Ken Kurokawa, Kousuke Tashiro, Toru Tobe, Keisuke Nakayama, Satoru Kuhara, Eric Oswald, Haruo Watanabe, Tetsuya Hayashi Genome Biology 2007, 8:R138 (10 July 2007)

Comparing the genomes of O157 and non-O157 enterohemorrhagic Escherichia coli (EHEC) strains reveals the selective conservation of a large number of virulence determinants.

Research article   Open Access Highly Accessed

Genome evolution in major Escherichia coli O157:H7 lineages

Yongxiang Zhang, Chad Laing, Marina Steele, Kim Ziebell, Roger Johnson, Andrew K Benson, Eduardo Taboada, Victor PJ Gannon BMC Genomics 2007, 8:121 (16 May 2007)

Research   Open Access Highly Accessed

Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial

Daniel G Lee, Jonathan M Urbach, Gang Wu, Nicole T Liberati, Rhonda L Feinbaum, Sachiko Miyata, Lenard T Diggins, Jianxin He, Maude Saucier, Eric Déziel, Lisa Friedman, Li Li, George Grills, Kate Montgomery, Raju Kucherlapati, Laurence G Rahme, Frederick M Ausubel Genome Biology 2006, 7:R90 (12 October 2006)

Sequencing of a highly virulent strain of Pseudomonas aeruginosa and comparison to a previously sequenced, less pathogenic, strain, together with experimental testing in a C. elegans model, suggests that Pseudomonas virulence is multifactorial and combinatorial.

Research article   Open Access

The use of comparative genomic hybridization to characterize genome dynamics and diversity among the serotypes of Shigella

Junping Peng, Xiaobing Zhang, Jian Yang, Jing Wang, E Yang, Wen Bin, Candong Wei, Meisheng Sun, Qi Jin BMC Genomics 2006, 7:218 (29 August 2006)

Research article   Open Access Highly Accessed

A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus

Yvan Charbonnier, Brian Gettler, Patrice François, Manuela Bento, Adriana Renzoni, Pierre Vaudaux, Werner Schlegel, Jacques Schrenzel BMC Genomics 2005, 6:95 (17 June 2005)

Research article   Open Access

A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study

Eduardo N Taboada, Rey R Acedillo, Christian C Luebbert, Wendy A Findlay, John HE Nash BMC Genomics 2005, 6:78 (27 May 2005)

Method   Open Access

Microarray-based genomic surveying of gene polymorphisms in Chlamydia trachomatis

Brian W Brunelle, Tracy L Nicholson, Richard S Stephens Genome Biology 2004, 5:R42 (18 May 2004)

Analysis of two genomes of Chlamydia trachomatis using competitive hybridization on DNA microarrays revealed a logarithmic correlation between the signal ratio of the arrays and the 75-99% range of nucleotide identities of the genes.

Research article   Open Access

Microarray genomotyping of key experimental strains of Neisseria gonorrhoeae reveals gene complement diversity and five new neisserial genes associated with Minimal Mobile Elements.

Lori AS Snyder, John K Davies, Nigel J Saunders BMC Genomics 2004, 5:23 (13 April 2004)