Table 2

Divergent genes of Helicobacter pylori strains

Strain

Number of divergent genes found in the original publication [11]

Number of divergent genes found by our constant-cutoff reanalysis

Number of divergent genes found by GACK trinary analysis

Difference between GACK and [11]


SS1

175

171

174

-1

G50

143

141

136

-7

SPM-314

117

114

161

44

H34

193

192

202

9

J99

130

130

161

31

AR32

122

122

158

36

SPM-292

190

188

208

18

26695

87

86

88

1

87A300

156

153

225

69

G27

147

148

164

17

NCTC11638

136

135

127

-9

SPM-342

164

166

185

21

SPM-326

129

130

190

61

G39

151

142

162

11

HP1

137

135

188

51

Mean

145

144

169

23


Kim et al. Genome Biology 2002 3:research0065.1-research0065.17   doi:10.1186/gb-2002-3-11-research0065

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