Table 3

Present genes of H. pylori strains

Strain

Number of present genes found in the original publication [11]

Number of present genes found by our constant-cutoff reanalysis

Number of present genes found by GACK trinary analysis

Difference between GACK and [11]


SS1

1,463

1,467

1,256

-207

G50

1,499

1,501

1,371

-128

SPM-314

1,526

1,529

1,289

-237

H34

1,449

1,450

1,249

-200

J99

1,511

1,511

1,309

-202

AR32

1,510

1,513

1,251

-259

SPM-292

1,453

1,455

1,242

-211

26695

1,556

1,557

1,398

-158

87A300

1,487

1,490

1,185

-302

G27

1,476

1,478

1,288

-188

NCTC11638

1,502

1,503

1,445

-57

SPM-342

1,477

1,475

1,302

-175

SPM-326

1,514

1,513

1,241

-273

G39

1,488

1,499

1,345

-143

HP1

1,506

1,508

1,284

-222

Mean

1,494

1,497

1,297

-197


Kim et al. Genome Biology 2002 3:research0065.1-research0065.17   doi:10.1186/gb-2002-3-11-research0065

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