Finding signals that regulate alternative splicing in the post-genomic era
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* Corresponding author: Thomas A Cooper tcooper@bcm.tmc.edu
Genome Biology 2002, 3:reviews0008-reviews0008.16 doi:10.1186/gb-2002-3-11-reviews0008
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BioMed Central: 12 citations
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Methodology article
Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays Katerina Kechris, Yee Yang, Ru-Fang Yeh BMC Genomics 2008, 9:551 (20 November 2008) |
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Research
Identification of motifs that function in the splicing of non-canonical introns Jill I Murray, Rodger B Voelker, Kristy L Henscheid, M Bryan Warf, J Andrew Berglund Genome Biology 2008, 9:R97 (12 June 2008) The enrichment of specific intronic splicing enhancers upstream of weak PY tracts suggests a novel mechanism for intron recognition that compensates for a weakened canonical pre-mRNA splicing motif. |
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Research article
Comparative analysis of sequence features involved in the recognition of tandem splice sites Ralf Bortfeldt, Stefanie Schindler, Karol Szafranski, Stefan Schuster, Dirk Holste BMC Genomics 2008, 9:202 (30 April 2008) |
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Research article
Mugdha Khaladkar, Jianghui Liu, Dongrong Wen, Jason TL Wang, Bin Tian BMC Genomics 2008, 9:189 (25 April 2008) |
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Research article
Features generated for computational splice-site prediction correspond to functional elements Rezarta Dogan, Lise Getoor, W John Wilbur, Stephen M Mount BMC Bioinformatics 2007, 8:410 (24 October 2007) |
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Research
Functional coordination of alternative splicing in the mammalian central nervous system Matthew Fagnani, Yoseph Barash, Joanna Y Ip, Christine Misquitta, Qun Pan, Arneet L Saltzman, Ofer Shai, Leo Lee, Aviad Rozenhek, Naveed Mohammad, Sandrine Willaime-Morawek, Tomas Babak, Wen Zhang, Timothy R Hughes, Derek van der Kooy, Brendan J Frey, Benjamin J Blencowe Genome Biology 2007, 8:R108 (12 June 2007) A microarray analysis provides new evidence suggesting that specific cellular processes in the mammalian CNS are coordinated at the level of alternative splicing, and that a complex splicing code underlies CNS-specific alternative splicing regulation. |
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Research article
Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li BMC Bioinformatics 2007, 8:194 (11 June 2007) |
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Research
Lars O Baumbusch, Simen Myhre, Anita Langerød, Anna Bergamaschi, Stephanie B Geisler, Per E Lønning, Wolfgang Deppert, Irene Dornreiter, Anne-Lise Børresen-Dale Molecular Cancer 2006, 5:47 (20 October 2006) |
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Research article
Organization and post-transcriptional processing of focal adhesion kinase gene Jean-Marc Corsi, Evelyne Rouer, Jean-Antoine Girault, Hervé Enslen BMC Genomics 2006, 7:198 (4 August 2006) |
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Research
Phylogenetically widespread alternative splicing at unusual GYNGYN donors Michael Hiller, Klaus Huse, Karol Szafranski, Philip Rosenstiel, Stefan Schreiber, Rolf Backofen, Matthias Platzer Genome Biology 2006, 7:R65 (25 July 2006) Computational and experimental evidence is given for alternative splicing at the unusual GYNGYN motif in several species, enabling in most cases subtle protein variations. |
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Minireview
Splicing regulators: targets and drugs Gene Yeo Genome Biology 2005, 6:240 (1 December 2005) Recent work has revealed a complex network of distinct alternative splicing events in |
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Database
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis Alexander Sczyrba, Michael Beckstette, Ali H Brivanlou, Robert Giegerich, Curtis R Altmann BMC Genomics 2005, 6:123 (14 September 2005) XenDB is a database of clustered EST and cDNA sequences from Xenopus laevis; ESTs are identified by a suffix array-based clustering approach and will be useful for researchers working on comparative genome analysis.
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