Table 3 |
||
|
Evidence supporting the euchromatic protein-coding gene models* |
||
| Data category |
Number of Release 3 protein-coding genes |
% of Release 3 protein-coding genes |
|
|
||
| Total |
13,379 |
100 |
| Release 2 annotations |
12,549 |
94 |
| Gene-prediction data only |
815 |
6 |
| Genie gene predictions |
12,427 |
93 |
| GENSCAN gene predictions |
12,853 |
96 |
| BLASTX/TBLASTX homologies |
10,996 |
82 |
| ESTs and DGC cDNA sequencing reads |
10,406 |
78 |
| GenBank accessions† |
3,104 |
23 |
| ARGS (RefSeq)‡ |
795 |
6 |
| Error report submissions |
825 |
6 |
| Full-insert DGC cDNAs§ |
9,297 |
69 |
|
|
||
|
*Determined by assessment of alignment overlap of data category versus gene model. †Not including those contributed by the BDGP (not mutually exclusive categories: many of these genes also have representative cDNA clones in the DGC). ‡ARGS, annotated reference gene sequence; high-quality FlyBase gene-level annotations that include data from the published literature; contributed to the NCBI reference sequence (RefSeq) project. §For a rigorous assessment of the quality of the DGC cDNAs, see [30]. |
||
|
Misra et al. Genome Biology 2002 3:research0083.1 doi:10.1186/gb-2002-3-12-research0083 |
||
