Computational analysis of core promoters in the Drosophila genome

Uwe Ohler¹^,4 , Guo-chun Liao¹, Heinrich Niemann³ and Gerald M Rubin¹^,2

¹Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720-3200, USA

²Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720-3200, USA

³Computer Science 5, University of Erlangen-Nuremberg, Martensstrasse 3, D-91058 Erlangen, Germany

⁴Current address: Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Ave 68-223, Cambridge, MA 02139, USA

author email corresponding author email

Genome Biology 2002, 3:research0087.1-0087.12doi:10.1186/gb-2002-3-12-research0087


Published:	20 December 2002

This article is part of a series of refereed research articles from Berkeley Drosophila Genome Project, FlyBase and colleagues, describing Release 3 of the Drosophila genome, which are freely available at http://genomebiology.com/drosophila/.

Subject areas: Genome studies, Model organisms, Molecular biology, Bioinformatics

Additional files

Additional data file 1:

Alignment positions of the most 5' ESTs of the 1,941 selected EST clusters for Release 2

Format: TXT Size: 56KB Download file

Additional data file 2:

Realignment of positions of the most 5' ESTs of the 1,941 selected EST clusters after Release 3

Format: TXT Size: 56KB Download file

Additional data file 3:

Weight matrixes for the 10 motifs shown in Table 2

Format: TXT Size: 6KB Download file

Additional data file 4:

The most frequent GO terms associated with each of the 10 motifs shown in Table 2