Table 1 |
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|
Influence of the parameter values on the number of selected clusters |
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| Parameter |
Value |
Number of clusters |
|
|
||
| Minimum distance to next upstream cluster (bp) |
0 |
1,997 |
| 2,000 |
1,852 |
|
| Window size (bp) |
21 |
2,691 |
| 16 |
2,321 |
|
| 6 |
1,597 |
|
| 1 |
865 |
|
| Percentage of 5' ends in window |
20 |
2,008 |
| 40 |
1,770 |
|
|
|
||
|
The default values are distance, 1,000 bp; window, 11 bp; percentage, 30. The table shows how the number of 1,941 selected clusters varies when one of the parameters is set to a lower or higher value, leaving the others at the default. |
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|
Ohler et al. Genome Biology 2002 3:research0087.1 doi:10.1186/gb-2002-3-12-research0087 |
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