Genome Biology

official impact factor 6.89

Open Access Research

Strong-association-rule mining for large-scale gene-expression data analysis: a case study on human SAGE data

Céline Becquet1, Sylvain Blachon1, Baptiste Jeudy2, Jean-Francois Boulicaut2 and Olivier Gandrillon1*

Author Affiliations

1 Equipe Signalisations et identités cellulaires, Centre de Génétique Moléculaire et Cellulaire CNRS UMR 5534, Université Claude Bernard Lyon 1, 16 rue Dubois, F-69622 Villeurbanne cedex, France

2 Laboratoire d'Ingénierie des Systèmes d'Information, Institut National des Sciences Appliquées de Lyon, Bâtiment Blaise Pascal, F-69621 Villeurbanne cedex, France

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Genome Biology 2002, 3:research0067-research0067.16 doi:10.1186/gb-2002-3-12-research0067

Published: 21 November 2002

Additional files

Additional data file 1:

The first 566 rules (out of 1,746) generated by ac-miner on a mid-range-based boolean matrix using a 10% frequency threshold.

Format: PDF Size: 239KB Download file

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Open Data

Additional data file 2:

Rules generated by ac-miner on a "5% cut-off" boolean matrix using either a 5% (A) or a 2 % (B) frequency threshold.

Format: PDF Size: 964KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional data file 3:

The longer set of rules: from the 1,746 rules generated by ac-miner on a mid-range-based boolean matrix using a 10% frequency threshold.

Format: PDF Size: 214KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional data file 4:

The SOTA clustering output translated into a color-coded Excel file.

Format: PDF Size: 197KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data