Genome Biology

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Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments

Jeffrey P Townsend* and Daniel L Hartl

Genome Biology 2002, 3:research0071-research0071.16 doi:10.1186/gb-2002-3-12-research0071

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Research article   Open Access

Functional and evolutionary correlates of gene constellations in the Drosophila melanogaster genome that deviate from the stereotypical gene architecture

Shuwei Li, Ching-Hua Shih, Michael H Kohn BMC Genomics 2010, 11:322 (24 May 2010)

Research article   Open Access

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata

Christian R Voolstra, Julia Schnetzer, Leonid Peshkin, Carly J Randall, Alina M Szmant, Mónica Medina BMC Genomics 2009, 10:627 (23 December 2009)

Research   Open Access

Gene expression variation in African and European populations of Drosophila melanogaster

Stephan Hutter, Sarah S Saminadin-Peter, Wolfgang Stephan, John Parsch Genome Biology 2008, 9:R12 (21 January 2008)

A survey of gene expression variation in 16 Drosophila melanogaster strains from two natural populations reveals traits that were important for local adaptation to the European and African environments.

Research article   Open Access

Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA – a Bayesian approach

Carmen Pin, Mark Reuter BMC Bioinformatics 2007, 8:455 (19 November 2007)

Methodology article   Open Access Highly Accessed

Bayesian meta-analysis models for microarray data: a comparative study

Erin M Conlon, Joon J Song, Anna Liu BMC Bioinformatics 2007, 8:80 (7 March 2007)

Of two recent ways to combine the results of microarrays using Bayesian statistics the simpler approach, which ignores variability across studies, actually performs better.

Research article   Open Access Highly Accessed

A two-sample Bayesian t-test for microarray data

Richard J Fox, Matthew W Dimmic BMC Bioinformatics 2006, 7:126 (10 March 2006)

Methodology article   Open Access

Tests for finding complex patterns of differential expression in cancers: towards individualized medicine

James Lyons-Weiler, Satish Patel, Michael J Becich, Tony E Godfrey BMC Bioinformatics 2004, 5:110 (12 August 2004)

Research article   Open Access

Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells

Bin Yao, Sanjay N Rakhade, Qunfang Li, Sharlin Ahmed, Raul Krauss, Sorin Draghici, Jeffrey A Loeb BMC Bioinformatics 2004, 5:99 (23 July 2004)