Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
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* Corresponding author: Susan E Celniker celniker@bdgp.lbl.gov
Genome Biology 2002, 3:research0079-0079.14 doi:10.1186/gb-2002-3-12-research0079
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Methodology article
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Database
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Software
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Research article
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome Mikhail Lipatov, Kapa Lenkov, Dmitri A Petrov, Casey M Bergman BMC Biology 2005, 3:24 (12 November 2005) Less than 1% of Drosophila transcripts contain 'chimeric' transposable elements, whereas a large proportion of mammalian genomes are known to be derived from TEs; population genetics implies that most fly gene-TE chimeras are deleterious, but a few may contribute to novel gene sequences.
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Research article
Sequence signature analysis of chromosome identity in three Drosophila species Per Stenberg, Fredrik Pettersson, Anja O Saura, Anders Berglund, Jan Larsson BMC Bioinformatics 2005, 6:158 (23 June 2005) |
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Method
Genomic analysis of heat-shock factor targets in Drosophila Ian Birch-Machin, Shan Gao, David Huen, Richard McGirr, Robert AH White, Steven Russell Genome Biology 2005, 6:R63 (10 June 2005) A ChIP-assay approach is used for the whole-genome transcription factor target mapping |
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Javier Costas, Cristina P Vieira, Fernando Casares, Jorge Vieira BMC Genomics 2003, 4:52 (16 December 2003) |
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Computational identification of Drosophila microRNA genes Eric C Lai, Pavel Tomancak, Robert W Williams, Gerald M Rubin Genome Biology 2003, 4:R42 (30 June 2003) An informatic procedure has been used to analyze the euchromatic sequences of |
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Minireview
Haiqiong Montalta-He, Heinrich Reichert Genome Biology 2003, 4:205 (28 January 2003) The establishment of a database of gene-expression patterns derived from systematic highthroughput |
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Heterochromatic sequences in a Drosophila whole-genome shotgun assembly Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen Genome Biology 2002, 3:research0085-0085.16 (31 December 2002) This article is part of a collection on Release 3 of the... Annotation of an improved whole-genome shotgun assembly of the |
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Research
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review Sima Misra, Madeline A Crosby, Christopher J Mungall, Beverley B Matthews, Kathryn S Campbell, Pavel Hradecky, Yanmei Huang, Joshua S Kaminker, Gillian H Millburn, Simon E Prochnik, Christopher D Smith, Jonathan L Tupy, Eleanor J Whitfield, Leyla Bayraktaroglu, Benjamin P Berman, Brian R Bettencourt, Susan E Celniker, Aubrey DNJ de Grey, Rachel A Drysdale, Nomi L Harris, John Richter, Susan Russo, Andrew J Schroeder, ShengQiang Shu, Mark Stapleton, Chihiro Yamada, Michael Ashburner, William M Gelbart, Gerald M Rubin, Suzanna E Lewis Genome Biology 2002, 3:research0083-0083.22 (31 December 2002) This article is part of a collection on Release 3 of the... The recent completion of the |
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Research
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective Joshua S Kaminker, Casey M Bergman, Brent Kronmiller, Joseph Carlson, Robert Svirskas, Sandeep Patel, Erwin Frise, David A Wheeler, Suzanna E Lewis, Gerald M Rubin, Michael Ashburner, Susan E Celniker Genome Biology 2002, 3:research0084-0084.20 (23 December 2002) This article is part of a collection on Release 3 of the... Using Release 3 of the euchromatic genomic sequence of |
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Software
An integrated computational pipeline and database to support whole-genome sequence annotation CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis Genome Biology 2002, 3:research0081-0081.11 (23 December 2002) This article is part of a collection on Release 3 of the... In the course of annotating the |
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Research
A Drosophila full-length cDNA resource Mark Stapleton, Joe Carlson, Peter Brokstein, Charles Yu, Mark Champe, Reed George, Hannibal Guarin, Brent Kronmiller, Joanne Pacleb, Soo Park, Ken Wan, Gerald M Rubin, Susan E Celniker Genome Biology 2002, 3:research0080-0080.8 (23 December 2002) This article is part of a collection on Release 3 of the... High-quality full-insert sequence for 8,921 putative full-length cDNA clones in the |