Table 2

Sequence content of gaps in Release 2

X

2L

2R

3L

3R

4

Subtotals

Total


Total gaps

743

154

145

269

189

31

1531

D*

U

D

U

D

U

D

U

D

U

D

U

D

U

606

137

86

68

77

68

189

80

128

61

21

10

1107

424

1531

0

Content

TEs

61

42

48

33

42

42

52

47

50

39

9

5

262

208

470

Simple repeats

353

10

19

9

15

4

109

2

38

9

10

2

544

36

580

Homopolymers

10

0

1

0

3

0

2

0

3

0

0

0

19

0

19

Unique sequence

150

23

13

8

8

11

21

24

28

3

1

0

221

69

290

Tandem repeats

14

34

1

12

3

6

0

0

1

10

0

1

19

63

82

Missassemblies

3

18

1

4

1

2

0

1

7

0

1

0

13

25

38

Gross misassemblies

1

0

1

1

3

0

0

0

1

0

0

1

6

2

8

Not yet determined

14

10

2

1

2

3

5

6

0

0

0

1

23

21

44


Analysis of the sequence gaps in Release 2 determined by comparison with Release 3 (see text for details).*Declared (D) gaps represented in Release 2 by sets of Ns. Undeclared (U) gaps not recognized in Release 2, and identified by comparison to Release 3.

Celniker et al. Genome Biology 2002 3:research0079.1-0079.14   doi:10.1186/gb-2002-3-12-research0079

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