Table 2 |
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|
Sequence content of gaps in Release 2 |
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|
X |
2L |
2R |
3L |
3R |
4 |
Subtotals |
Total |
||||||||
|
|
|||||||||||||||
|
Total gaps |
743 |
154 |
145 |
269 |
189 |
31 |
1531 |
||||||||
|
D* |
U† |
D |
U |
D |
U |
D |
U |
D |
U |
D |
U |
D |
U |
||
|
606 |
137 |
86 |
68 |
77 |
68 |
189 |
80 |
128 |
61 |
21 |
10 |
1107 |
424 |
1531 |
|
|
0 |
|||||||||||||||
|
Content |
|||||||||||||||
|
TEs |
61 |
42 |
48 |
33 |
42 |
42 |
52 |
47 |
50 |
39 |
9 |
5 |
262 |
208 |
470 |
|
Simple repeats |
353 |
10 |
19 |
9 |
15 |
4 |
109 |
2 |
38 |
9 |
10 |
2 |
544 |
36 |
580 |
|
Homopolymers |
10 |
0 |
1 |
0 |
3 |
0 |
2 |
0 |
3 |
0 |
0 |
0 |
19 |
0 |
19 |
|
Unique sequence |
150 |
23 |
13 |
8 |
8 |
11 |
21 |
24 |
28 |
3 |
1 |
0 |
221 |
69 |
290 |
|
Tandem repeats |
14 |
34 |
1 |
12 |
3 |
6 |
0 |
0 |
1 |
10 |
0 |
1 |
19 |
63 |
82 |
|
Missassemblies |
3 |
18 |
1 |
4 |
1 |
2 |
0 |
1 |
7 |
0 |
1 |
0 |
13 |
25 |
38 |
|
Gross misassemblies |
1 |
0 |
1 |
1 |
3 |
0 |
0 |
0 |
1 |
0 |
0 |
1 |
6 |
2 |
8 |
|
Not yet determined |
14 |
10 |
2 |
1 |
2 |
3 |
5 |
6 |
0 |
0 |
0 |
1 |
23 |
21 |
44 |
|
|
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|
Analysis of the sequence gaps in Release 2 determined by comparison with Release 3 (see text for details).*Declared (D) gaps represented in Release 2 by sets of Ns. †Undeclared (U) gaps not recognized in Release 2, and identified by comparison to Release 3. |
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|
Celniker et al. Genome Biology 2002 3:research0079.1 doi:10.1186/gb-2002-3-12-research0079 |
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