Table 2

Example of PEP-QC output

Peptide position

SPTRREAL position

Discrepancy description

M1

M1..E88

Amino-terminal insertion: Q960X8 contains an additional stretch of 88 amino acids

CG2903-PB

Q960X8

M163

K163

Internal substitution of one amino acid

CG2903-PB

Q960X8

G1533..D1537

P1580..Q1589

Carboxy-terminal replacement of five amino acids with 10 amino acids

CG2903-PB

Q960X8

For each discrepancy we show the sequence affected and the position on the sequence for both Gadfly and SWISS-PROT peptides. The peptide sequence identifiers are in bold.

Mungall et al. Genome Biology 2002 3:research0081.1   doi:10.1186/gb-2002-3-12-research0081