The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
-
* Corresponding author: Michael Ashburner ma11@gen.cam.ac.uk
Genome Biology 2002, 3:research0084-0084.20 doi:10.1186/gb-2002-3-12-research0084
Accesses
- Last 30 days: 395 accesses
- Last year: 3785 accesses
- All time: 38617 accesses
Cited by
BioMed Central: 22 citations
|
Research article
Paula M Moolhuijzen, Ala E Lew-Tabor, Jess A T Morgan, Manuel Valle, Daniel G Peterson, Scot E Dowd, Felix D Guerrero, Matthew I Bellgard, Rudi Appels BMC Research Notes 2011, 4:254 (22 July 2011) |
|
Research
DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex Sarah Schaack, Eunjin Choi, Michael Lynch, Ellen J Pritham Genome Biology 2010, 11:R46 (30 April 2010) This article is part of a collection on Daphnia: the companion... Transposable elements in Daphnia pulex are identified and the impact of sex on their evolution is experimentally assessed
|
|
Research article
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom Florian Maumus, Andrew E Allen, Corinne Mhiri, Hanhua Hu, Kamel Jabbari, Assaf Vardi, Marie-Angèle Grandbastien, Chris Bowler BMC Genomics 2009, 10:624 (22 December 2009) |
|
Research article
Nicole de la Chaux, Andreas Wagner BMC Evolutionary Biology 2009, 9:205 (18 August 2009) |
|
Research article
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes Adriana Granzotto, Fabrício R Lopes, Emmanuelle Lerat, Cristina Vieira, Claudia MA Carareto BMC Evolutionary Biology 2009, 9:174 (22 July 2009) |
|
Research
Deborah E Stage, Thomas H Eickbush Genome Biology 2009, 10:R49 (5 May 2009) Comparative analysis of 12 Drosophila genomes reveals insights into the evolution and mechanism of integration of R1 and R2 retrotransposons. |
|
Research
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes Carolina Bartolomé, Xabier Bello, Xulio Maside Genome Biology 2009, 10:R22 (18 February 2009) A genome-wide comparison of transposable elements reveals evidence for unexpectedly high rates of horizontal transfer between three species of Drosophila |
|
Software
Automated paleontology of repetitive DNA with RE Vini Pereira BMC Genomics 2008, 9:614 (18 December 2008) |
|
Software
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons David Ellinghaus, Stefan Kurtz, Ute Willhoeft BMC Bioinformatics 2008, 9:18 (14 January 2008) |
|
Research article
Clémentine Vitte, Olivier Panaud, Hadi Quesneville BMC Genomics 2007, 8:218 (6 July 2007) |
|
Research
Casey M Bergman, Hadi Quesneville, Dominique Anxolabéhère, Michael Ashburner Genome Biology 2006, 7:R112 (29 November 2006) An analysis of high-resolution transposable element annotations in Drosophila melanogaster suggests the existence of a global surveillance system against the majority of transposable elements families in the fly. |
|
Research
Joseph F Ryan, Patrick M Burton, Maureen E Mazza, Grace K Kwong, James C Mullikin, John R Finnerty Genome Biology 2006, 7:R64 (24 July 2006) The first near-complete set of homeodomains from a non-bilaterian animal is described. |
|
Research article
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome Mikhail Lipatov, Kapa Lenkov, Dmitri A Petrov, Casey M Bergman BMC Biology 2005, 3:24 (12 November 2005) Less than 1% of Drosophila transcripts contain 'chimeric' transposable elements, whereas a large proportion of mammalian genomes are known to be derived from TEs; population genetics implies that most fly gene-TE chimeras are deleterious, but a few may contribute to novel gene sequences.
|
|
Research article
Sequence signature analysis of chromosome identity in three Drosophila species Per Stenberg, Fredrik Pettersson, Anja O Saura, Anders Berglund, Jan Larsson BMC Bioinformatics 2005, 6:158 (23 June 2005) |
|
Methodology article
Detection of transposable elements by their compositional bias Olivier Andrieu, Anna-Sophie Fiston, Dominique Anxolabéhère, Hadi Quesneville BMC Bioinformatics 2004, 5:94 (13 July 2004) |
|
Research article
Benchmarking tools for the alignment of functional noncoding DNA Daniel A Pollard, Casey M Bergman, Jens Stoye, Susan E Celniker, Michael B Eisen BMC Bioinformatics 2004, 5:6 (21 January 2004) |
|
Minireview
Haiqiong Montalta-He, Heinrich Reichert Genome Biology 2003, 4:205 (28 January 2003) The establishment of a database of gene-expression patterns derived from systematic highthroughput |
|
Research
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen Genome Biology 2002, 3:research0085-0085.16 (31 December 2002) This article is part of a collection on Release 3 of the... Annotation of an improved whole-genome shotgun assembly of the |
|
Research
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review Sima Misra, Madeline A Crosby, Christopher J Mungall, Beverley B Matthews, Kathryn S Campbell, Pavel Hradecky, Yanmei Huang, Joshua S Kaminker, Gillian H Millburn, Simon E Prochnik, Christopher D Smith, Jonathan L Tupy, Eleanor J Whitfield, Leyla Bayraktaroglu, Benjamin P Berman, Brian R Bettencourt, Susan E Celniker, Aubrey DNJ de Grey, Rachel A Drysdale, Nomi L Harris, John Richter, Susan Russo, Andrew J Schroeder, ShengQiang Shu, Mark Stapleton, Chihiro Yamada, Michael Ashburner, William M Gelbart, Gerald M Rubin, Suzanna E Lewis Genome Biology 2002, 3:research0083-0083.22 (31 December 2002) This article is part of a collection on Release 3 of the... The recent completion of the |
|
Software
An integrated computational pipeline and database to support whole-genome sequence annotation CJ Mungall, S Misra, BP Berman, J Carlson, E Frise, N Harris, B Marshall, S Shu, JS Kaminker, SE Prochnik, CD Smith, E Smith, JL Tupy, C Wiel, GM Rubin, SE Lewis Genome Biology 2002, 3:research0081-0081.11 (23 December 2002) This article is part of a collection on Release 3 of the... In the course of annotating the |
|
Research
A Drosophila full-length cDNA resource Mark Stapleton, Joe Carlson, Peter Brokstein, Charles Yu, Mark Champe, Reed George, Hannibal Guarin, Brent Kronmiller, Joanne Pacleb, Soo Park, Ken Wan, Gerald M Rubin, Susan E Celniker Genome Biology 2002, 3:research0080-0080.8 (23 December 2002) This article is part of a collection on Release 3 of the... High-quality full-insert sequence for 8,921 putative full-length cDNA clones in the |
|
Research
Susan E Celniker, David A Wheeler, Brent Kronmiller, Joseph W Carlson, Aaron Halpern, Sandeep Patel, Mark Adams, Mark Champe, Shannon P Dugan, Erwin Frise, Ann Hodgson, Reed A George, Roger A Hoskins, Todd Laverty, Donna M Muzny, Catherine R Nelson, Joanne M Pacleb, Soo Park, Barret D Pfeiffer, Stephen Richards, Erica J Sodergren, Robert Svirskas, Paul E Tabor, Kenneth Wan, Mark Stapleton, Granger G Sutton, Craig Venter, George Weinstock, Steven E Scherer, Eugene W Myers, Richard A Gibbs, Gerald M Rubin et al. Genome Biology 2002, 3:research0079-0079.14 (23 December 2002) This article is part of a collection on Release 3 of the... The |