Genome Biology

official impact factor 6.89

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Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays

Felix Naef*, Coleen R Hacker, Nila Patil and Marcelo Magnasco

Genome Biology 2002, 3:research0018-research0018.11 doi:10.1186/gb-2002-3-4-research0018

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Research article   Open Access

Altered gene expression in highly purified enterocytes from patients with active coeliac disease

Suzanne Bracken, Greg Byrne, Jacinta Kelly, John Jackson, Conleth Feighery BMC Genomics 2008, 9:377 (8 August 2008)

Research article   Open Access Highly Accessed

Methods for evaluating gene expression from Affymetrix microarray datasets

Ning Jiang, Lindsey J Leach, Xiaohua Hu, Elena Potokina, Tianye Jia, Arnis Druka, Robbie Waugh, Michael J Kearsey, Zewei W Luo BMC Bioinformatics 2008, 9:284 (17 June 2008)

Comparison of the most commonly used statistical methods for assessing differential gene expression from Affymetrix microarrays on a high-quality dataset shows that PDNN is the best performer, clearly superior to the standard Affymetrix MAS5.0 method.

Research article   Open Access

A proposed metric for assessing the measurement quality of individual microarrays

Kyoungmi Kim, Grier P Page, T Mark Beasley, Stephen Barnes, Katherine E Scheirer, David B Allison BMC Bioinformatics 2006, 7:35 (23 January 2006)

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Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations

Richard Shippy, Timothy J Sendera, Randall Lockner, Chockalingam Palaniappan, Tamma Kaysser-Kranich, George Watts, John Alsobrook BMC Genomics 2004, 5:61 (2 September 2004)

A comprehensive comparison of two short-oligonucleotide microarrays offers guidelines for making cross-platform correlations

Methodology article   Open Access

Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays

Chao Lu BMC Bioinformatics 2004, 5:103 (29 July 2004)

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Computational method for reducing variance with Affymetrix microarrays

Stephen Welle, Andrew I Brooks, Charles A Thornton BMC Bioinformatics 2002, 3:23 (30 August 2002)