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Open Access Research

Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays

Felix Naef1*, Coleen R Hacker2, Nila Patil2 and Marcelo Magnasco1

Author Affiliations

1 Mathematical Physics Laboratory, Center for Studies in Physics and Biology, The Rockefeller University, 1230 York Ave, NY 10021, USA

2 Perlegen Sciences, Inc., 2021 Stierlin Court, Mountain View, CA 94043, USA

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Genome Biology 2002, 3:research0018-research0018.11  doi:10.1186/gb-2002-3-4-research0018


A previous version of this manuscript was made available before peer review at http://genomebiology.com/2001/3/1/preprint/0001/

Published: 22 March 2002

Additional files

Additional data file 1:

cdf2psc: converts a .cdf file into a .psc file.

Format: TXT Size: 2KB Download file

Open Data

Additional data file 2:

cel2ratios: converts two .PCEL files into ratios.

Format: TXT Size: 22KB Download file

Open Data

Additional data file 3:

cel2raw: converts .CEL files into .RAW files.

Format: TXT Size: 3KB Download file

Open Data

Additional data file 4:

raw2pcel: estimates background and so on.

Format: TXT Size: 12KB Download file

Open Data

Additional data file 5:

Explanatory file

Format: TXT Size: 3KB Download file

Open Data