Scatterplot and quantile-quantile (QQ) plots. (a) Typical scatterplot showing increasing levels of differential regulation, together with the 2σ noise envelopes (red lines). There are three different conditions: A, B and C. AA is a duplicate of A. (b) Associated QQ plots of LR/σ (η). The data shown here were obtained using four out of the 12 Mu11KsubA chips used in Figures 1 and 2.
Naef et al. Genome Biology 2002 3:research0018.1 doi:10.1186/gb-2002-3-4-research0018