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Micro-exons from each of the five chromosomes, listed in order of increasing length |
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| Locus |
Gene name |
cDNA accession |
Exon number |
Exon length (nucleotides) |
Micro-exon sequence |
|
|
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| At5g51700 |
RAR1 |
Ceres:99615 |
2 of 6 |
3 |
AG<GGA>GT |
| At1g63290 |
D-ribulose-5-phosphate-3-epimerase |
Ceres:37843 |
2 of 8 |
5 |
AG<GACGG>GT |
| At3g01850 |
D-ribulose-5-phosphate-3-epimerase |
Ceres:2398 |
2 of 9 |
5 |
AG<GACGG>GT |
| At4g01610 |
Cysteine protease |
Ceres:20761 |
5 of 11 |
5 |
AG<ATCAG>GT |
| At5g14030 |
Expressed protein |
Ceres:16313. |
5 of 6 |
6 |
AG<GCCAAG>GT |
| At2g38880 |
Putative CCAAT-binding transcription factor subunit |
Ceres:7805. |
4 of 7 |
6 |
AG<TTGGAG>GT |
| At2g07340 |
Expressed protein |
Ceres:34060. |
4 of 6 |
7 |
AG<GAAGAAC>GT |
| At2g41710 |
AP2 domain transcription factor |
Ceres:41462 |
3 of 9 |
9 |
AG<TTTATCTAG>GT |
| At2g36190 |
Beta-fructofuranosidase |
Ceres:118038 |
2 of 6 |
9 |
AG<ATCCAAATG>GT |
| At4g13720 |
Auxin-regulated protein |
Ceres:8361 |
4 of 8 |
10 |
AG<GGCCATACAT>GT |
| At4g29510 |
Arginine methyltransferase (pam1) |
Ceres:38601 |
2 of 9 |
11 |
AG<GAATCCATGAA>GT |
| At3g55260 |
Beta-N-acetylhexosaminidase |
Ceres:118286 |
7 of 15 |
17 |
AG<GTTTGCCAAAATGAGAG>GT |
| At1g80380 |
Auxin-regulated protein |
Ceres:117698 |
3 of 7 |
18 |
AG<GTACCTAGGTACAATAAG>GT |
| At3g55630 |
Tetrahydrofolylpolyglutamate synthase |
Ceres:230791. |
6 of 15 |
18 |
AG<GAGAAAACCAGCAATGAG>GT |
| At5g61530 |
Auxin-regulated protein |
Ceres:152557 |
5 of 10 |
19 |
AG<GGAGTTGCCAGCTCAGATG>GT |
| At5g03880 |
Auxin-regulated protein |
Ceres:37668 |
4 of 12 |
19 |
AG<CTGTCCCTTCTGCCGGAAG>GT |
| *At4g23470 |
Expressed protein |
Ceres:25694. |
7 of 8 |
19 |
AG<GGTTTGCGCATGTATGCAG>GT |
| At1g67320 |
Expressed protein |
Ceres:116252. |
7 of 18 |
20 |
AG<TTGAAAACATTTACTACAAG>GT |
| At3g50210 |
Flavonol synthase |
Ceres:25787. |
8 of 12 |
20 |
AG<TGGAGCTCACACTGACTATG>GT |
| At4g37680 |
Expressed protein |
Ceres: 262351. |
2 of 5 |
21 |
AG<GGTTTGTCTTTCGAAATTCAG>GT |
| At3g60340 |
Palmitoyl-protein thioesterase |
Ceres:38539. |
5 of 12 |
21 |
AG<ACATCAGTTGTTTGTGAGAAG>GT |
| At3g23600 |
Expressed protein |
Ceres:11339. |
2 of 7 |
22 |
AG<GTTTTGAAGCTCCAAACTTAAG>GT |
| At5g46030 |
Expressed protein |
Ceres:15222. |
4 of 5 |
22 |
AG<CTTTGACTGAAGCTATAGACAT>GT |
| At4g33925 |
Expressed protein |
Ceres:24360. |
2 of 5 |
22 |
AG<TAACCGAAGAACAGCTCTCAAT>GT |
| *At4g23470 |
Expressed protein |
Ceres:25694. |
2 of 8 |
22 |
AG<ATTGTTGCTTCGCGTTGTGGTG>GT |
| At3g13860 |
Chaperonin, putative |
Ceres:38045. |
2 of 17 |
22 |
AG<CTCGTCTACTTCCAGGAAACTG>GT |
| At1g73180 |
Expressed protein |
Ceres:108165. |
13 of 14 |
23 |
AG<TTACTTGGAATAAGCACAACAGG>GT |
| At5g09830 |
Expressed protein |
Ceres:37422. |
2 of 3 |
23 |
AG<GAAGTCATTGACATATCTGGAGG>GT |
| At2g23930 |
Small nuclear ribonucleoprotein E |
Ceres:4850. |
2 of 4 |
23 |
AG<GTACATGGATAAGAAGCTCCAAA>GT |
| At1g66940 |
Expressed protein |
Ceres:110066. |
3 of 5 |
24 |
AG<AATCTAATATTAGATGGATAATAG>GT |
| At5g51100 |
Expressed protein |
Ceres:126592. |
8 of 9 |
24 |
AG<CACGCTTACTATCTGGATTTTGAG>GT |
| At1g05070 |
Expressed protein |
Ceres:13725. |
2 of 3 |
24 |
AG<AGCTCAGTAATGCTTCTTTTGCTG>GT |
| At2g32580 |
Expressed protein |
Ceres:16625. |
2 of 3 |
24 |
AG<GACTCAGCAATGGTTCATTCACTG>GT |
| At2g29960 |
Cyclophilin |
Ceres:19211. |
4 of 6 |
24 |
AG<AAAACTTCAGAGCTTTGTGCACAG>GT |
| At1g65220 |
Expressed protein |
Ceres:21223. |
2 of 8 |
24 |
AG<CTCAAAGGAGAAGCCCACTCTCGG>GT |
| At5g23310 |
Iron superoxide dismutase 3 |
Ceres:26637. |
7 of 8 |
24 |
AG<CACTCTTATTATCTGGACTACAAG>GT |
| At4g25100 |
Superoxide dismutase |
Ceres:32935. |
6 of 7 |
24 |
AG<CATGCTTACTACCTTGACTTCCAG>GT |
| At3g55920 |
Cyclophilin-like protein |
Ceres:94608. |
5 of 8 |
24 |
AG<AGAACTTTCGGTCACTTTGCACGG>GT |
| At1g77060 |
Carboxyphosphonoenol-pyruvate mutase, putative |
Ceres:12293. |
4 of 6 |
25 |
AG<GACCAAGCATGGCCAAAGAAGTGTG>GT |
| At4g15900 |
PRL1 protein |
Ceres:123113. |
2 of 17 |
25 |
AG<CAAGCAGATTCGTCTCAGCCATAAG>GT |
| At2g47640 |
Putative small nuclear ribonucleoprotein D2 |
Ceres:26123. |
3 of 6 |
25 |
AG<CAAGCCAATGGAAGAGGATACCAAT>GT |
| At2g41630 |
Transcription factor IIB (TFIIB) |
Ceres:2657. |
2 of 7 |
25 |
AG<GTTGGGACTTGTTGCAACTATCAAG>GT |
| At3g62840 |
Small nuclear ribonucleoprotein |
Ceres:32457. |
3 of 5 |
25 |
AG<TAAACCAATGGAAGAGGATACCAAC>GT |
| At2g21270 |
Putative ubiquitin fusion-degradation protein |
Ceres:34470. |
4 of 10 |
25 |
AG<CCACAACTTGAAAGTGGTGACAAGA>GT |
| At3g10330 |
Transcription initiation factor IIB (TFIIB) |
Ceres:38950. |
2 of 7 |
25 |
AG<GTTGGGACTTGTTGCGACCATCAAG>GT |
| At1g42480 |
Expressed protein |
Ceres:42677. |
7 of 9 |
25 |
AG<ATTGCTGGAGGAAACTGAAGATGAG>GT |
| At2g23985 |
Expressed protein |
Ceres:252843. |
2 of 4 |
25 |
AG<TGTCTTGTTCAGGTGAACAAAAAAG>GT |
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*At4g23470 contains two micro-exons. | |||||
Haas et al. Genome Biology 2002 3:research0029.1 doi:10.1186/gb-2002-3-6-research0029 |
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