|
Putative protein-coding genes identified in Gemmata obscuriglobus |
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| Clone number |
GenBank accession |
Best BLASTX match |
E value of best match |
Species of best match (GenBank accession number) |
Domain of best match* |
|
|
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| Metabolism and biosynthesis |
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| G63 |
BH001096 |
Putative isopropylmalate dehydratase |
9.00E-09 |
Methanococcus jannaschii (Q58673) |
B |
| G80 |
BH001097 |
Heptaprenyl diphosphate synthase component |
6.00E-18 |
Bacillus stearothermophilus (P55785) |
B |
| G83 |
BH001098 |
Peptide methionine sulfoxide reductase |
4.00E-11 |
Deinococcus radiodurans (Q9RTB6) |
B |
| G84 |
BH001099 |
N4-(beta-N-acetylglucosaminyl)-L-asparaginase precursor |
6.00E-27 |
Flavobacterium meningosepticum (Q47898) |
B |
| G87 |
BH001100 |
3-Oxoadipate enol-lactonase |
2.00E-08 |
Acinetobacter calcoaceticus (P00632) |
B |
| G103 |
BH001101 |
Diaminopimelate epimerase |
2.00E-43 |
Synechocystis PCC6803 (P74667) |
B |
| G108 |
BH001102 |
FDHD protein homolog |
2.00E-45 |
Streptomyces coelicolor (Q9ZBWO) |
B |
| G110 |
BH001103 |
Acyl-CoA fatty-acid delta (9) desaturase |
3.00E-05 |
Rattus norvegicus (P07308) |
E |
| G136 |
BH001104 |
1,4-Alpha-glucan branching enzyme |
4.00E-11 |
Bacillus caldolyticus (P30537) |
B |
| G179 |
BH001105 |
Putative asparagine synthetase (glutamine-hydrolyzing) |
2.00E-07 |
Mycobacterium tuberculosis (O10374) |
B |
| G184 |
BH001106 |
2-Amino-3-ketobutyrate coenzyme A ligase |
5.00E-25 |
Bacillus subtilis (O31777) |
B |
| G222 |
BH001107 |
Threonine dehydratase biosynthetic (threonine deaminase) |
9.00E-53 |
Burkholderia cepacia (P53607) |
B |
| G240 |
BH001108 |
Ribonucleotide reductase large chain |
1.00E-05 |
Schizosaccharomyces pombe (P36602) |
E |
| Transport |
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| G74 |
BH001109 |
Large conductance mechanosensitive channel |
8.00E-10 |
Haemophilus influenzae (P44789) |
B |
| G139 |
BH001110 |
Cadmium efflux system accessory protein |
4.00E-05 |
Listeria monocytogenes (Q56405) |
B |
| G185 |
BH001111 |
Sulfate transport ATP-binding protein CysA |
6.00E-35 |
Synechocystis PCC6803 (P74548) |
B |
| Regulation and signal transduction |
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| G99 |
BH001112 |
OmpR homolog |
6.00E-11 |
Guillardia theta chloroplast (AF041468) |
E(c) |
| G114 |
BH001113 |
Nitrogen regulation protein NtrB |
2.00E-16 |
Bradyrhizobium sp.(P10578) |
B |
| G217 |
BH001114 |
Transcriptional regulatory protein AfsQ1 |
3.00E-09 |
Streptomyces coelicolor (Q04942) |
B |
| G223 |
BH001115 |
Transcriptional repressor SmtB |
2.00E-05 |
Synechococcus PCC7942 (P30340) |
B |
| DNA replication/insertion |
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| VG33 |
BH001116 |
Replicative DNA helicase |
2.00E-11 |
Synechocystis PCC6803 (Q55418) |
B |
| G86 |
BH001117 |
H repeat-associated protein in RHSC-PHRB intergenic region |
1.00E-17 |
Escherichia coli (P75741) |
B |
| G142 |
BH001118 |
TraI protein (DNA helicase I) |
2.00E-12 |
Escherichia coli (P14565) |
B |
| G165 |
BH001119 |
Insertion element IS402 hypothetical 24 kd |
6.00E-05 |
Burkholderia cepacia (P24536) |
B |
| G182 |
BH001120 |
Putative helicase HelY |
5.00E-05 |
Mycobacterium tuberculosis (Q10701) |
B |
| G196 |
BH001121 |
TraI protein (DNA helicase I) |
3.00E-12 |
Escherichia coli (P14565) |
B |
| G235 |
BH001122 |
Probable transposase for insertion sequence element IS702 |
3.00E-18 |
Fremyella diplosiphon (Q00462) |
B |
| Translation |
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| G51 |
BH001123 |
50S ribosomal protein L23 |
1.00E-13 |
Aquifex aeolicus (O66433) |
B |
| G154 |
BH001124 |
50S ribosomal protein L4 |
3.00E-10 |
Bacillus stearothermophilus (P28601) |
B |
| G156 |
BH001125 |
Arginyl-tRNA synthetase |
4.00E-21 |
Escherichia coli (P11875) |
B |
| G230 |
BH001126 |
Probable tRNA methyl transferase |
5.00E-05 |
Synechocystis PCC6803 (P73755) |
B |
| Miscellaneous |
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| VG17 |
BH001127 |
Serine-threonine protein kinase |
1.00E-22 |
Myxococcus xanthus (P54737) |
B |
| G92 |
BH001128 |
Cell division protein FtsH |
4.00E-04 |
Lactococcus lactis subsp. lactis (P46469) |
B |
| G149 |
BH001129 |
Integrin alpha-V (vitronectin receptor alpha subunit precursor) |
9.00E-05 |
Homo sapiens (P06756) |
E |
| G159 |
BH001130 |
Serine protease DO-like precursor |
7.00E-10 |
Chlamydia trachomatis (P18584) |
B |
| G189 |
BH001131 |
H repeat-associated protein in RHSE-NARV intergenic region |
2.00E-13 |
Escherichia coli (P28917) |
B |
| G191 |
BH001132 |
Ribonuclease inhibitor |
6.00E-05 |
Sus scrofa (P10775) |
E |
| Hypothetical proteins |
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| VG21 |
BH001133 |
Hypothetical 47.5 kDa protein Cy9c4.09 |
1.00E-04 |
Mycobacterium tuberculosis (Q50739) |
B |
| G76 |
BH001134 |
Hypothetical protein in DHLA 3' region |
3.00E-17 |
Xanthobacter autotrophicus (P22644) |
B |
| G96 |
BH001135 |
Hypothetical 42.1 kDa protein |
5.00E-04 |
Bacillus subtilis (O31712) |
B |
| G137 |
BH001136 |
Hypothetical protein in DHLA 3' region |
4.00E-31 |
Xanthobacter autotrophicus (P22644) |
B |
| G180 |
BH001137 |
Hypothetical 30.2 kDa protein SLR1717 |
1.00E-29 |
Synechocystis strain PCC6803 (P73846) |
B |
| G231 |
BH001138 |
Hypothetical protein MJ0682 |
2.00E-35 |
Methanococcus jannaschii (Q58095) |
A |
|
*B, Bacteria; A, Archaea; E, Eukarya; E(c), eukaryal chloroplast. | |||||
Jenkins et al. Genome Biology 2002 3:research0031.1 doi:10.1186/gb-2002-3-6-research0031 |
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