Table 5 |
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Alternative acceptor and donor splice sites, alternative 5'exons, and exon skipping examples based on cDNA alignments |
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Locus |
Gene name |
cDNA accessions |
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Alternative acceptor splice sites |
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At3g58710 |
WRKY DNA-binding protein |
Ceres:100465, gi:15991735 |
|
At5g35680 |
Expressed protein |
Ceres:11304, gi:14596002 |
|
At2g38860 |
Expressed protein |
Ceres:114031, gi:13122287 |
|
At4g31550 |
DNA-binding protein |
Ceres:11953, gi:15384214 |
|
At1g22700 |
Expressed protein |
Ceres:120133, gi:15294175 |
|
At4g30480 |
Expressed protein |
Ceres:12573, gi:14423435 |
|
At1g52870 |
Expressed protein |
Ceres:126586, gi:14326544 |
|
At5g41810 |
Expressed protein |
Ceres:126660, gi:14532565 |
|
At1g63970 |
Expressed protein |
Ceres:15758, gi:11386014 |
|
At2g33830 |
Auxin-regulated protein |
Ceres:1711, gi:11127600 |
|
At5g20040 |
IPP transferase |
Ceres:19250, gi:14279069 |
|
At3g55330 |
Oxygen-evloving complex subunit |
Ceres:21674, Ceres:3747 |
|
At1g60850 |
RNA polymerase subunit |
Ceres:21961, gi:514321 |
|
At1g76405 |
Expressed protein |
Ceres:23773, gi:13358245 |
|
At1g22630 |
Expressed protein |
Ceres:37537, gi:15010607 |
|
At1g02500 |
S-adenosylmethionine synthase |
Ceres:37800, gi:15450420 |
|
At4g20380 |
Zinc finger protein Lsd1 |
Ceres:38456, gi:1872520 |
|
At3g54380 |
Expressed protein |
Ceres:38778, gi:14423485 |
|
At3g04830 |
Expressed protein |
Ceres:38917, gi:15293268 |
|
At1g11840 |
Lactoylglutathione lyase |
Ceres:39107, gi:11094298 |
|
At1g02090 |
COP9 complex subunit |
Ceres:40042, gi:3288822 |
|
At1g79650 |
DNA repair protein RAD23 |
Ceres:40579, gi:14334441 |
|
At2g25625 |
Expressed protein |
Ceres:465, gi:14334615 |
|
At4g02640 |
Expressed protein |
Ceres:6568, gi:10954094 |
|
At3g11930 |
Ethylene-responsive protein |
Ceres:7474, gi:13926249 |
|
At2g20820 |
Expressed protein |
Ceres:91872, gi:14190456 |
|
At3g09150 |
Expressed protein |
Ceres:98026, gi:13359272 |
|
Alternative donor splice sites |
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|
At1g16460 |
Mercaptopyruvate sulfurtransferase |
Ceres:111646, gi:6009982 |
|
At5g16540 |
Zinc finger protein 3 |
Ceres:113763, gi:4689375 |
|
At2g41070 |
bZIP family transcription factor |
Ceres:114632, gi:13346156 |
|
At2g36000 |
Expressed protein |
Ceres:123727, gi:14532493 |
|
At3g21175 |
Expressed protein |
Ceres:12996, gi:14596058 |
|
At5g61880 |
Expressed protein |
Ceres:146274, gi:14517497 |
|
At3g14230 |
RAP2 family protein |
Ceres:158240, gi:15450917 |
|
At3g03890 |
Expressed protein |
Ceres:18355, gi:14190432 |
|
At1g67700 |
Expressed protein |
Ceres:19973, gi:15215605 |
|
At3g55630 |
Tetrahydrofolylpolyglutamate synthase |
Ceres:230791, gi:15292866 |
|
At2g21620 |
Expressed protein |
Ceres:31655, gi:15320407 |
|
At4g10100 |
Expressed protein |
Ceres:35962, gi:6635742 |
|
At1g23950 |
Expressed protein |
Ceres:41387, gi:15146261 |
|
At1g24260 |
Floral homeotic protein |
Ceres:5055, gi:2345157 |
|
At2g39730 |
Expressed protein |
Ceres:7114, gi:15450670 |
|
At3g07760 |
Expressed protein |
Ceres:7246, gi:15451021 |
|
At3g06720 |
Importin alpha |
Ceres:9351, gi:4191743 |
|
Alternative 5' exons |
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|
At3g57810 |
Expressed protein |
Ceres:101256, Ceres:29384 |
|
At3g03780 |
Methionine synthase |
Ceres:111720, gi:14532771 |
|
At5g59890 |
Actin depolymerizing factor 4 |
Ceres:11691, gi:15215858 |
|
At3g49010 |
60S ribosomal protein L13 |
Ceres:12182, gi:15292840 |
|
At5g52210 |
GTP-binding protein |
Ceres:16621, gi:1184980 |
|
At1g01100 |
Acidic ribosomal protein |
Ceres:24367, gi:15293082 |
|
At2g41430 |
ERD15 |
Ceres:31388, gi:13926319 |
|
At3g08580 |
Adenylate translocator |
Ceres:36818, gi:1433 |
|
At5g05000 |
GTP-binding protein |
Ceres:6734, gi:1151243 |
|
At3g48880 |
Expressed protein |
Ceres:99337, gi:15028346 |
|
Exon skipping |
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|
At5g54940 |
Translation initiation factor |
Ceres:103464, Ceres:32071 |
|
At2g46800 |
Zinc transporter |
Ceres:207558, gi:4206639 |
|
At5g53860 |
Expressed protein |
Ceres:22860, gi:15215799 |
|
At5g27840 |
TOPP8 Ser/Thr protein phosphatase type-1 |
Ceres:38656, gi:14596132 |
|
At3g23280 |
Expressed protein |
Ceres:41648, gi:15010671 |
|
At1g77080 |
Expressed protein |
Ceres:92459, gi:11545544, gi:11545546, gi:13649968 |
|
|
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A full list with illustrations and supporting alignment data is available at [26]. |
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Haas et al. Genome Biology 2002 3:research0029.1 doi:10.1186/gb-2002-3-6-research0029 |
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