Table 2

Percentage of genes identical among all genes detected by different combinations of normalization and statistical analysis

Invariant feature; AD, F
 Invariant feature; AD, KW
 Invariant feature; AD, SAM
 Invariant feature; MBEV, F
 Invariant feature; MBEV, KW
 Invariant feature; MBEV, SAM
 Invariant set; F
 Invariant set; KW
 Invariant set; SAM
 Global scaling; F
 Global scaling; KW
 Global scaling; SAM
Invariant feature; AD, F
93
 100
 78
 83
 92
 81
 83
 88
 64
 74
 78
Invariant feature; AD, KW
 74
95
 67
 79
 82
 74
 79
 81
 55
 67
 69
Invariant feature; AD, SAM
 56
 66
51
 59
 74
 58
 61
 66
 41
 50
 54
Invariant feature; MBEV, F
 69
 75
 82
96
 100
 77
 80
 82
 58
 67
 70
Invariant feature; MBEV, KW
 62
 74
 79
 80
95
 71
 75
 77
 51
 62
 64
Invariant feature; MBEV, SAM
 56
 63
 81
 68
 77
63
 66
 70
 44
 53
 57
Invariant set; F
 59
 69
 77
 63
 70
 76
98
 100
 56
 67
 70
Invariant set; KW
 56
 67
 74
 60
 68
 74
 90
96
 52
 66
 66
Invariant set; SAM
 55
 64
 74
 58
 65
 73
 85
 89
49
 61
 66
Global scaling; F
 80
 87
 92
 81
 86
 90
 95*
 96*
 98*
100
 100
Global scaling; KW
 72
 83
 88
 73
 82
 85
 89
 96*
 95*
 78
93
Global scaling; SAM
 70
 78
 88
 71
 77
 84
 85
 89
 94*
 72
 86

Percentages are relative to the method defined in the column headings. Values of 100% and greater than 90% are highlighted in bold. *Percentage of genes identified after invariant probe set normalization that are also identified after global scaling (see text for details).

Hoffmann et al. Genome Biology 2002 3:research0033.1   doi:10.1186/gb-2002-3-7-research0033