Transcriptional programs activated by exposure of human prostate cancer cells to androgen
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* Corresponding author: James D Brooks jdbrooks@stanford.edu
Genome Biology 2002, 3:research0032-research0032.12 doi:10.1186/gb-2002-3-7-research0032
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BioMed Central: 8 citations
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Method
Gene ontology analysis for RNA-seq: accounting for selection bias Matthew D Young, Matthew J Wakefield, Gordon K Smyth, Alicia Oshlack Genome Biology 2010, 11:R14 (4 February 2010) GOseq is a method for GO analysis of RNA-seq data that takes into account the length bias inherent in RNA-seq |
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Research article
Hongjuan Zhao, Vincent Flamand, Donna M Peehl BMC Medical Genomics 2009, 2:55 (20 August 2009) |
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Research article
Comparative expression pathway analysis of human and canine mammary tumors Paolo Uva, Luigi Aurisicchio, James Watters, Andrey Loboda, Amit Kulkarni, John Castle, Fabio Palombo, Valentina Viti, Giuseppe Mesiti, Valentina Zappulli, Laura Marconato, Francesca Abramo, Gennaro Ciliberto, Armin Lahm, Nicola La Monica, Emanuele de Rinaldis BMC Genomics 2009, 10:135 (27 March 2009) |
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Research article
Androgen responsive intronic non-coding RNAs Rodrigo Louro, Helder I Nakaya, Paulo P Amaral, Fernanda Festa, Mari C Sogayar, Aline M da Silva, Sergio Verjovski-Almeida, Eduardo M Reis BMC Biology 2007, 5:4 (30 January 2007) Androgen affects the transcription levels of intronic noncoding RNAs in the same way as it affects transcription of corresponding protein-coding genes suggesting that intronic transcripts may have functional roles in human gene expression.
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Research
Chad J Creighton, Kevin E Cordero, Jose M Larios, Rebecca S Miller, Michael D Johnson, Arul M Chinnaiyan, Marc E Lippman, James M Rae Genome Biology 2006, 7:R28 (7 April 2006) Estrogen-regulated gene expression profiles of |
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Software
A method for detecting and correcting feature misidentification on expression microarrays I-Ping Tu, Marci Schaner, Maximilian Diehn, Branimir I Sikic, Patrick O Brown, David Botstein, Michael J Fero BMC Genomics 2004, 5:64 (9 September 2004) |
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Research
Michael E Wright, Jimmy Eng, James Sherman, David M Hockenbery, Peter S Nelson, Timothy Galitski, Ruedi Aebersold Genome Biology 2003, 5:R4 (23 December 2003) A large-scale proteomic approach has been used to define cellular processes that are responsive to androgen treatment in LNCaP prostate cancer cells. The results provide evidence for the role of androgenic hormones in coordinating the expression of critical components involved in distinct cellular processes |
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Research
Paul-Martin Holterhus, Olaf Hiort, Janos Demeter, Patrick O Brown, James D Brooks Genome Biology 2003, 4:R37 (15 May 2003) Most individuals with androgen insensitivity syndrome (AIS) carry germline mutations of the androgen receptor (AR) that interfere with or ablate its function. As genital fibroblasts retain expression of the AR |