Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
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* Corresponding author: Frank Speleman franki.speleman@rug.ac.be
Genome Biology 2002, 3:research0034-research0034.11 doi:10.1186/gb-2002-3-7-research0034
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Validation of internal control for gene expression study in soybean by quantitative real-time PCR Bo Jian, Bin Liu, Yurong Bi, Wensheng Hou, Cunxiang Wu, Tianfu Han BMC Molecular Biology 2008, 9:59 (23 June 2008) |
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Research article
Selection of reference genes for quantitative real-time PCR in a rat asphyxial cardiac arrest model Kristina Langnaese, Robin John, Hannes Schweizer, Uwe Ebmeyer, Gerburg Keilhoff BMC Molecular Biology 2008, 9:53 (28 May 2008) |
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Research article
Katia Cappelli, Michela Felicetti, Stefano Capomaccio, Giacomo Spinsanti, Maurizio Silvestrelli, Andrea Supplizi BMC Molecular Biology 2008, 9:49 (19 May 2008) |
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Research article
Expression profile of the entire family of Adhesion G protein-coupled receptors in mouse and rat Tatjana Haitina, Fredrik Olsson, Olga Stephansson, Johan Alsiö, Erika Roman, Ted Ebendal, Helgi B Schiöth, Robert Fredriksson BMC Neuroscience 2008, 9:43 (29 April 2008) |
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Technical advance
Expression profiling with RNA from formalin-fixed, paraffin-embedded material Andrea Oberli, Vlad Popovici, Mauro Delorenzi, Anna Baltzer, Janine Antonov, Sybille Matthey, Stefan Aebi, Hans Altermatt, Rolf Jaggi BMC Medical Genomics 2008, 1:9 (19 April 2008) |
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Research article
Sven Jørgensen, Sergey Afanasyev, Aleksei Krasnov BMC Genomics 2008, 9:179 (18 April 2008) |
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Research article
Anna MS Kindlundh-Högberg, Anna Blomqvist, Rana Malki, Helgi B Schiöth BMC Neuroscience 2008, 9:39 (17 April 2008) |
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Research article
Anne-Marie Cleton-Jansen, Ronald van Eijk, Marcel Lombaerts, Marjanka K Schmidt, Laura J Van't Veer, Katja Philippo, Rhyenne ME Zimmerman, Johannes L Peterse, Vincent TBHM Smit, Tom van Wezel, Cees J Cornelisse BMC Cancer 2008, 8:105 (16 April 2008) |
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Research article
Anders Ståhlberg, Karin Elbing, José Andrade-Garda, Björn Sjögreen, Amin Forootan, Mikael Kubista BMC Genomics 2008, 9:170 (16 April 2008) |
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Methodology article
Soroush Sharbati-Tehrani, Barbara Kutz-Lohroff, Ramona Bergbauer, Jutta Scholven, Ralf Einspanier BMC Molecular Biology 2008, 9:34 (10 April 2008) |
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Research article
Janee Gelineau-van Waes, Joyce R Maddox, Lynette M Smith, Michael van Waes, Justin Wilberding, James D Eudy, Linda K Bauer, Richard H Finnell BMC Genomics 2008, 9:156 (9 April 2008) |
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Research article
John MJ Herbert, Dov Stekel, Sharon Sanderson, Victoria L Heath, Roy Bicknell BMC Genomics 2008, 9:153 (7 April 2008) |
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Research article
Rupert Langer, Marcus Feith, Joerg Siewert, Hans-Juergen Wester, Heinz Hoefler BMC Cancer 2008, 8:70 (10 March 2008) |
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Research article
Carlos Infante, Makoto P Matsuoka, Esther Asensio, José Cañavate, Michael Reith, Manuel Manchado BMC Molecular Biology 2008, 9:28 (6 March 2008) |
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Research article
The calcium-binding protein S100P in normal and malignant human tissues Seppo Parkkila, Pei-wen Pan, Aoife Ward, Adriana Gibadulinova, Ingrid Oveckova, Silvia Pastorekova, Jaromir Pastorek, Alejandra Martinez, Henrik O Helin, Jorma Isola BMC Clinical Pathology 2008, 8:2 (18 February 2008) |
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Research article
Sascha Hibbeler, Joern P Scharsack, Sven Becker BMC Molecular Biology 2008, 9:18 (29 January 2008) |
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Research article
David Hoogewijs, Koen Houthoofd, Filip Matthijssens, Jo Vandesompele, Jacques R Vanfleteren BMC Molecular Biology 2008, 9:9 (22 January 2008) |
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Research article
Identification of genes for normalization of real-time RT-PCR data in breast carcinomas Maria B Lyng, Anne-Vibeke Lænkholm, Niels Pallisgaard, Henrik J Ditzel BMC Cancer 2008, 8:20 (22 January 2008) |
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Research article
Štefan Čikoš, Alexandra Bukovská, Juraj Koppel BMC Molecular Biology 2007, 8:113 (20 December 2007) |
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Research article
Serial Analysis of Gene Expression in Plasmodium berghei salivary gland sporozoites Isabelle Rosinski-Chupin, Thomas Chertemps, Bertrand Boisson, Sylvie Perrot, Emmanuel Bischoff, Jérôme Briolay, Pierre Couble, Robert Ménard, Paul Brey, Patricia Baldacci BMC Genomics 2007, 8:466 (19 December 2007) |
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Methodology
Sarah Watson, Sarah Mercier, Chris Bye, John Wilkinson, Anthony L Cunningham, Andrew N Harman Virology Journal 2007, 4:130 (3 December 2007) |
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Research article
Bojlul Bahar, Frank J Monahan, Aidan P Moloney, Olaf Schmidt, David E MacHugh, Torres Sweeney BMC Molecular Biology 2007, 8:108 (29 November 2007) |
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Methodology article
Roisin E McNeill, Nicola Miller, Michael J Kerin BMC Molecular Biology 2007, 8:107 (27 November 2007) |
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Research article
Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development Laurent G Deluc, Jérôme Grimplet, Matthew D Wheatley, Richard L Tillett, David R Quilici, Craig Osborne, David A Schooley, Karen A Schlauch, John C Cushman, Grant R Cramer BMC Genomics 2007, 8:429 (22 November 2007) Cabernet Sauvignon grapes undergo a complex series of biochemical changes during ripening, expressing an extensive catalog of genes, including those involved the production of sugars and aroma compounds that underlie their flavor.
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Research article
Steeve Bourane, Ilana Méchaly, Stéphanie Venteo, Alain Garces, Agnes Fichard, Jean Valmier, Patrick Carroll BMC Neuroscience 2007, 8:97 (19 November 2007) |
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Research article
Effects of iron loading on muscle: genome-wide mRNA expression profiling in the mouse Alejandra Rodriguez, Mika Hilvo, Leena Kytömäki, Robert E Fleming, Robert S Britton, Bruce R Bacon, Seppo Parkkila BMC Genomics 2007, 8:379 (19 October 2007) |
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Research article
David Hoogewijs, Eva Geuens, Sylvia Dewilde, Andy Vierstraete, Luc Moens, Serge Vinogradov, Jacques R Vanfleteren BMC Genomics 2007, 8:356 (4 October 2007) |
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Research
Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression Jennifer Beane, Paola Sebastiani, Gang Liu, Jerome S Brody, Marc E Lenburg, Avrum Spira Genome Biology 2007, 8:R201 (25 September 2007) Oligonucleotide microarray analysis revealed 175 genes that are differentially expressed in large airway epithelial cells of people who currently smoke compared with those who never smoked, with 28 classified as irreversible, 6 as slowly reversible, and 139 as rapidly reversible. |
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Research article
Gunnhild W Takle, Ian K Toth, May B Brurberg BMC Plant Biology 2007, 7:50 (21 September 2007) |
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Research article
Enitan D Carrol, Fiona Salway, Stuart D Pepper, Emma Saunders, Limangeni A Mankhambo, William E Ollier, C Anthony Hart, Phillip Day BMC Immunology 2007, 8:20 (12 September 2007) |
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Research article
BCoR-L1 variation and breast cancer Felicity Lose, Jeremy Arnold, David B Young, Carolyn J Brown, Graham J Mann, Gulietta M Pupo, Kum Khanna, Georgia Chenevix-Trench, Amanda B Spurdle Breast Cancer Research 2007, 9:R54 (16 August 2007) |
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Research article
De-regulation of common housekeeping genes in hepatocellular carcinoma Samuel Waxman, Elisa Wurmbach BMC Genomics 2007, 8:243 (18 July 2007) |
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Research
Renée Drolet, Marc Simard, Julie Plante, Philippe Laberge, Yves Tremblay Reproductive Biology and Endocrinology 2007, 5:30 (10 July 2007) |
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Research article
Vincent A Funari, Allen Day, Deborah Krakow, Zachary A Cohn, Zugen Chen, Stanley F Nelson, Daniel H Cohn BMC Genomics 2007, 8:165 (12 June 2007) |
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Research
Large-scale identification of human genes implicated in epidermal barrier function Eve Toulza, Nicolas R Mattiuzzo, Marie-Florence Galliano, Nathalie Jonca, Carole Dossat, Daniel Jacob, Antoine de Daruvar, Patrick Wincker, Guy Serre, Marina Guerrin Genome Biology 2007, 8:R107 (11 June 2007) Identification of genes expressed in epidermal granular keratinocytes by ORESTES, including a number that are highly specific for these cells. |
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Methodology article
Li-Jen Su, Ching-Wei Chang, Yu-Chung Wu, Kuang-Chi Chen, Chien-Ju Lin, Shu-Ching Liang, Chi-Hung Lin, Jacqueline Whang-Peng, Shih-Lan Hsu, Chen-Hsin Chen, Chi-Ying F Huang BMC Genomics 2007, 8:140 (1 June 2007) |
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Methodology article
Ewart W Kuijk, Leonie du Puy, Helena TA van Tol, Henk P Haagsman, Ben Colenbrander, Bernard AJ Roelen BMC Developmental Biology 2007, 7:58 (31 May 2007) |
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Research
Gene expression variation in Down's syndrome mice allows prioritization of candidate genes Marc Sultan, Ilaria Piccini, Daniela Balzereit, Ralf Herwig, Nidhi G Saran, Hans Lehrach, Roger H Reeves, Marie-Laure Yaspo Genome Biology 2007, 8:R91 (25 May 2007) RNA from eight Ts65Dn mice (a model of Down syndrome) and eight euploid mice were analysed by real-time PCR to examine inter-individual gene expression levels as a function of trisomy. |
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Research article
Reduced expression of TAC1, PENK and SOCS2 in Hcrtr-2 mutated narcoleptic dog brain Julia Lindberg, Peter Saetre, Seiji Nishino, Emmanuel Mignot, Elena Jazin BMC Neuroscience 2007, 8:34 (23 May 2007) |
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Research article
The interaction of PP1 with BRCA1 and analysis of their expression in breast tumors Sherry L Winter, Lucine Bosnoyan-Collins, Dushanthi Pinnaduwage, Irene L Andrulis BMC Cancer 2007, 7:85 (19 May 2007) |
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Research article
Expression stability of commonly used reference genes in canine articular connective tissues Duncan Ayers, Dylan N Clements, Fiona Salway, Philip JR Day BMC Veterinary Research 2007, 3:7 (7 May 2007) |
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Research
CIDE-A is expressed in liver of old mice and in type 2 diabetic mouse liver exhibiting steatosis Bruce Kelder, Keith Boyce, Andres Kriete, Ryan Clark, Darlene E Berryman, Sheila Nagatomi, Edward O List, Mark Braughler, John J Kopchick Comparative Hepatology 2007, 6:4 (1 May 2007) |
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Research
Selection for tameness modulates the expression of heme related genes in silver foxes Julia Lindberg, Susanne Björnerfeldt, Morten Bakken, Carles Vilà, Elena Jazin, Peter Saetre Behavioral and Brain Functions 2007, 3:18 (17 April 2007) |
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Research
Jan Gorodkin, Susanna Cirera, Jakob Hedegaard, Michael J Gilchrist, Frank Panitz, Claus Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J Nielsen, Jakob H Havgaard, Carina Rosenkilde, Jun Wang, Heng Li, Ruiqiang Li, Bin Liu, Songnian Hu, Wei Dong, Wei Li, Jun Yu, Jian Wang, Hans-Henrik Stærfeldt, Rasmus Wernersson, Lone B Madsen, Bo Thomsen, Henrik Hornshøj, Zhan Bujie, Xuegang Wang, Xuefei Wang, Lars Bolund, Søren Brunak, Huanming Yang, Christian Bendixen, Merete Fredholm et al. Genome Biology 2007, 8:R45 (2 April 2007) A resource consisting of one million porcine ESTs is described, providing an essential resource for annotation, comparative genomics, assembly of the pig genome sequence, and further porcine transcription studies. |
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Research article
A systematic quantification of carbonic anhydrase transcripts in the mouse digestive system Pei-wen Pan, Alejandra Rodriguez, Seppo Parkkila BMC Molecular Biology 2007, 8:22 (16 March 2007) |
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Research article
Judith N Kloth, Jan Oosting, Tom van Wezel, Karoly Szuhai, Jeroen Knijnenburg, Arko Gorter, Gemma G Kenter, Gert Fleuren, Ekaterina S Jordanova BMC Genomics 2007, 8:53 (20 February 2007) |
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Method
Jan Hellemans, Geert Mortier, Anne De Paepe, Frank Speleman, Jo Vandesompele Genome Biology 2007, 8:R19 (9 February 2007) qBase, a free program for the management and automated analysis of qPCR data, is described |
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Methodology article
Sergey V Anisimov, Nicolaj S Christophersen, Ana S Correia, Jia-Yi Li, Patrik Brundin BMC Genomics 2007, 8:46 (8 February 2007) |
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Research article
Fiona E Lovegrove, Lourdes Peña-Castillo, Naveed Mohammad, W Conrad Liles, Timothy R Hughes, Kevin C Kain BMC Genomics 2006, 7:295 (22 November 2006) |
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Research
Lars O Baumbusch, Simen Myhre, Anita Langerød, Anna Bergamaschi, Stephanie B Geisler, Per E Lønning, Wolfgang Deppert, Irene Dornreiter, Anne-Lise Børresen-Dale Molecular Cancer 2006, 5:47 (20 October 2006) |
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Research article
Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat Wayne Crismani, Ute Baumann, Tim Sutton, Neil Shirley, Tracie Webster, German Spangenberg, Peter Langridge, Jason A Able BMC Genomics 2006, 7:267 (19 October 2006) |
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Research article
Dylan N Clements, Stuart D Carter, John F Innes, William ER Ollier, Philip JR Day Arthritis Research & Therapy 2006, 8:R158 (10 October 2006) |
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Methodology article
Nicholas Silver, Steve Best, Jie Jiang, Swee Thein BMC Molecular Biology 2006, 7:33 (6 October 2006) |
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Research
Katleen De Preter, Jo Vandesompele, Pierre Heimann, Nurten Yigit, Siv Beckman, Alexander Schramm, Angelika Eggert, Raymond L Stallings, Yves Benoit, Marleen Renard, Anne Paepe, Geneviève Laureys, Sven Påhlman, Frank Speleman Genome Biology 2006, 7:R84 (21 September 2006) Transcriptome profiling of neuroblasts and neuroblastoma tumor cells provides strong support for a neuroblast origin of neuroblastoma and highlights new candidate neuroblastoma genes |
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Research article
Giacomo Spinsanti, Cristina Panti, Elisa Lazzeri, Letizia Marsili, Silvia Casini, Francesco Frati, Cristina Fossi BMC Molecular Biology 2006, 7:32 (19 September 2006) |
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Research
Bart Spee, Martijn DB Jonkers, Brigitte Arends, Gerard R Rutteman, Jan Rothuizen, Louis C Penning Molecular Cancer 2006, 5:34 (5 September 2006) |
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Research article
Heleen Nailis, Tom Coenye, Filip Van Nieuwerburgh, Dieter Deforce, Hans J Nelis BMC Molecular Biology 2006, 7:25 (4 August 2006) |
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Research article
Silvia Saviozzi, Francesca Cordero, Marco Iacono, Silvia Novello, Scagliotti V Giorgio, Raffaele A Calogero BMC Cancer 2006, 6:200 (26 July 2006) |
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Research article
M Barat-Houari, F Hilliou, F-X Jousset, L Sofer, E Deleury, J Rocher, M Ravallec, L Galibert, P Delobel, R Feyereisen, P Fournier, A-N Volkoff BMC Genomics 2006, 7:160 (21 June 2006) Parasitic wasps can suppress their hosts’ defence mechanisms through the action of endosymbiotic polydnaviruses, as shown by changes in the transcript levels of specific host genes in the presence of such a virus.
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Research
L Galibert, G Devauchelle, F Cousserans, J Rocher, P Cérutti, M Barat-Houari, P Fournier, AN Volkoff Virology Journal 2006, 3:48 (19 June 2006) |
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Research article
AIB1 gene amplification and the instability of polyQ encoding sequence in breast cancer cell lines Lee-Jun C Wong, Pu Dai, Jyh-Feng Lu, Mary Lou, Robert Clarke, Viktor Nazarov BMC Cancer 2006, 6:111 (2 May 2006) |
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Research article
Differential expression of selected histone modifier genes in human solid cancers Hilal Özdağ, Andrew E Teschendorff, Ahmed Ahmed, Sarah J Hyland, Cherie Blenkiron, Linda Bobrow, Abhi Veerakumarasivam, Glynn Burtt, Tanya Subkhankulova, Mark J Arends, V Peter Collins, David Bowtell, Tony Kouzarides, James D Brenton, Carlos Caldas BMC Genomics 2006, 7:90 (25 April 2006) |
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Research article
Expression analysis of candidate breast tumour suppressor genes on chromosome 16q Tom van Wezel, Marcel Lombaerts, Eddy H van Roon, Katja Philippo, Hans J Baelde, Karoly Szuhai, Cees J Cornelisse, Anne-Marie Cleton-Jansen Breast Cancer Research 2005, 7:R998-R1004 (18 October 2005) |
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Research
Xin Li, Carson Wong, Ralph Mysel, Gennady Slobodov, Adam Metwalli, Jarrett Kruska, C Scott Manatt, Daniel J Culkin, Bradley P Kropp, Hsueh-Kung Lin Molecular Cancer 2005, 4:30 (8 August 2005) |
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Research article
Positional and functional mapping of a neuroblastoma differentiation gene on chromosome 11 Katleen De Preter, Jo Vandesompele, Björn Menten, Philippa Carr, Heike Fiegler, Anders Edsjö, Nigel P Carter, Nurten Yigit, Wim Waelput, Nadine Van Roy, Scott Bader, Sven Påhlman, Frank Speleman BMC Genomics 2005, 6:97 (6 July 2005) |
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Research article
Palm is expressed in both developing and adult mouse lens and retina Meryl Castellini, Louise V Wolf, Bharesh K Chauhan, Deni S Galileo, Manfred W Kilimann, Ales Cvekl, Melinda K Duncan BMC Ophthalmology 2005, 5:14 (21 June 2005) |
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Methodology article
A standard curve based method for relative real time PCR data processing Alexey Larionov, Andreas Krause, William Miller BMC Bioinformatics 2005, 6:62 (21 March 2005) A standard curve-based method for processing relative real time PCR data is simple and reliable, avoiding the need to measure PCR efficiency and requiring minimal operator input.
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Research article
Selection of reference genes for gene expression studies in human neutrophils by real-time PCR Xiaozhu Zhang, Lily Ding, Andrew J Sandford BMC Molecular Biology 2005, 6:4 (18 February 2005) |
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Research
Aleksandar Radonić, Stefanie Thulke, Hi-Gung Bae, Marcel A Müller, Wolfgang Siegert, Andreas Nitsche Virology Journal 2005, 2:7 (10 February 2005) |
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Research
Identifying genetic networks underlying myometrial transition to labor Nathan Salomonis, Nathalie Cotte, Alexander C Zambon, Katherine S Pollard, Karen Vranizan, Scott W Doniger, Gregory Dolganov, Bruce R Conklin Genome Biology 2005, 6:R12 (28 January 2005) A time course of gene expression at the onset of labor reveals transcriptional networks associated with activation of the uterine muscle and identifies targets for drugs to prevent premature labor. |
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Research article
Inmaculada Rioja, Chris L Clayton, Simon J Graham, Paul F Life, Marion C Dickson Arthritis Res Ther 2005, 7:R101-R117 (19 November 2004) |
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Review
Danielle M Carrick, Wi S Lai, Perry J Blackshear Arthritis Res Ther 2004, 6:248-264 (8 October 2004) |
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Method
Statistical modeling for selecting housekeeper genes Aniko Szabo, Charles M Perou, Mehmet Karaca, Laurent Perreard, John F Quackenbush, Philip S Bernard Genome Biology 2004, 5:R59 (29 July 2004) Statistical models are presented for selecting the best housekeepers to normalize quantitative data within a given tissue type and across different types of tissue samples. |
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Research article
Katleen De Preter, Filip Pattyn, Geert Berx, Kristin Strumane, Björn Menten, Frans Van Roy, Anne De Paepe, Frank Speleman, Jo Vandesompele BMC Genomics 2004, 5:11 (3 February 2004) |