BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data

Lao H Saal¹^,2^,4, Carl Troein³^,4, Johan Vallon-Christersson¹^,4, Sofia Gruvberger¹, Åke Borg¹ and Carsten Peterson³

¹Department of Oncology, Lund University Hospital, SE-22185 Lund, Sweden

²Medical Scientist Training Program, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA

³Complex Systems Division, Department of Theoretical Physics, Lund University, SE-22362 Lund, Sweden

⁴These authors contributed equally to this work

author email corresponding author email

Genome Biology 2002, 3:software0003.1-0003.6doi:10.1186/gb-2002-3-8-software0003


Published:	15 July 2002

Disclaimer: Whilst every effort is made by the authors, editors and publishers to ensure that the software performs as described, they accept no liability whatsoever for the consequences of downloading or using it.

Subject areas: Bioinformatics, Methods, Genome studies

Abstract

The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their extracted data matrices, and information about the physical array, the features and reporter molecules. We present a web-based customizable bioinformatics solution called BioArray Software Environment (BASE) for the management and analysis of all areas of microarray experimentation. All software necessary to run a local server is freely available.